Luteibacter rhizovicinus DSM 16549: BJI69_00970
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Entry
BJI69_00970 CDS
T04563
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lrz
Luteibacter rhizovicinus DSM 16549
Pathway
lrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJI69_00970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrz03019
]
BJI69_00970
03009 Ribosome biogenesis [BR:
lrz03009
]
BJI69_00970
Enzymes [BR:
lrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJI69_00970
Messenger RNA biogenesis [BR:
lrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJI69_00970
Ribosome biogenesis [BR:
lrz03009
]
Prokaryotic type
rRNA helicases
BJI69_00970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
adh_short
UvrA_inter
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
APG06283
UniProt:
A0A1L3EZ12
LinkDB
All DBs
Position
187409..189289
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AA seq
626 aa
AA seq
DB search
MSSPDTDNAPAQPGFSALALDEKVMRVLAEVGYEVPSPIQAATIPPLLEGRDVIGQAQTG
TGKTAAFALPVLSRIDLKPGKPQALVLAPTRELAIQVAEAFQKYATYMPGFQVLPIYGGQ
SYGPQLQGLKRGAQVIVGTPGRVIDHLDKGTLDLSGLRFLVLDEADEMLRMGFIDDVEKL
LQATPKTRQVALFSATMPAPIRRIAQTYLKEPIEITIKNKTTTAANIRQRYWFVSGVHKL
DALTRILEAESFDAMIVFTRTKQATEELASKLQARGFAAAAINGDIAQAQRERVIDQLKT
GKLDILIATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPRE
KNLLRQIERATRQPIEQMQLPTIEAVNDTRINKFNQKITDTLATGDLGLFQQMVEKFEQE
HNIPAIEIAAALAKIAQGDQPLLLEPPAKREYTERPPREFDRERPQRDFDRDRGPRDSGG
DFNDRRPVREGMRQPRPHTTEAGKRTYRIEVGHEHGVKPGNIVGAIANEGGVEAKFIGRV
SIRDDYSLIDLPDGMPPEVFTHLKKVWVAQQQLKIAEWDGVEAPQSGNASRPPQRSFRPQ
GARPGGHGGAGGPPGGGKPPRKKRDY
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcccccgatacagataacgctccggctcagcccggttttagcgcgctcgcgctc
gacgaaaaagtcatgcgcgtcctggccgaagtcggctacgaagtgccgtcgccgatccag
gccgccaccattccgccgctgctcgaaggccgcgacgtcatcggccaggcgcagaccggc
accggcaagaccgctgccttcgcgctgccggtgctctcgcgcatcgacctgaagcccggc
aagccgcaggcgctggttctcgcgcccacccgcgagctcgccattcaggtcgccgaggcc
ttccagaagtacgccacctacatgcccggcttccaggtcctgccgatctacggcggccag
agctacggcccgcagctgcagggcctcaagcgcggtgcgcaggtcatcgtcggcacaccg
ggtcgcgtcatcgaccatctcgacaagggcacgctggatctgtccggcctgcgcttcctg
gtgctcgacgaagccgacgaaatgcttcgcatgggcttcatcgacgacgtcgagaagctg
ctgcaggccacgccgaagacgcgtcaggtcgccctgttctccgcgaccatgccggcgccg
atccgtcgcatcgcgcagacctacctgaaagagccgatcgagatcacgatcaagaacaag
accacgaccgcggcgaacattcgccagcgttactggtttgtcagcggcgtgcacaagctc
gacgcactgacccgcatcctcgaagccgaaagcttcgacgcgatgatcgtgttcacgcgc
accaagcaggctaccgaagaactggcaagcaagctgcaggcaaggggttttgccgcggct
gccatcaacggcgacatcgcccaggcgcagcgtgagcgcgtgatcgaccagctgaagacc
ggcaagctcgacattctcatcgcgaccgacgtggctgcccgcggcctcgacgtcgagcgc
atcagccacgtgctgaactacgacatcccgcacgacaccgagtcgtacgtgcatcgcatc
ggtcgtaccggccgcgccggtcgcagtggtgaggcgatcctgttcgtcacgccgcgcgag
aagaacctgctccgccagatcgagcgcgccacgcgccagccgatcgaacagatgcagttg
ccgacgatcgaagcggtcaacgacacgcgcatcaacaagttcaaccagaagatcaccgac
acgctggcgacgggcgacctcggcctgttccagcagatggtcgagaagttcgagcaggag
cacaacattcctgcgatcgagatcgccgccgcgctggccaagatcgcccagggcgaccag
ccgctgttgctcgagccgccggccaagcgcgaatacaccgagcgtccgccgcgcgagttc
gatcgcgagcgtccgcagcgtgacttcgaccgtgaccgtggtccgcgcgacagcggtggc
gacttcaacgaccgtcgtccggttcgtgaaggcatgcgccagccgcgtccgcacaccacg
gaagccggcaagcgcacgtaccgcatcgaagtgggtcacgagcacggcgtcaagccgggc
aacatcgtcggtgccatcgccaacgaaggcggcgtcgaggccaagttcatcggtcgcgtg
agcatccgtgacgactacagcctgatcgacctgccggacggcatgccgccggaggtcttc
acccacctgaagaaggtgtgggttgcccagcagcagctgaagatcgccgagtgggatggc
gtggaagccccgcagagcggcaacgcctcgcgtccgccgcagcgcagcttccgtccccag
ggcgcccgccccggtggccacggtggcgctggcggtcctcccggtggcggcaagccgccg
cgcaagaagcgcgattactga
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