Luteibacter rhizovicinus DSM 16549: BJI69_05095
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Entry
BJI69_05095 CDS
T04563
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
lrz
Luteibacter rhizovicinus DSM 16549
Brite
KEGG Orthology (KO) [BR:
lrz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrz03019
]
BJI69_05095
Enzymes [BR:
lrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BJI69_05095
Messenger RNA biogenesis [BR:
lrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BJI69_05095
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
CON_HrpB
ResIII
Motif
Other DBs
NCBI-ProteinID:
APG03350
UniProt:
A0A0G9HJC8
LinkDB
All DBs
Position
complement(1088820..1091330)
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AA seq
836 aa
AA seq
DB search
MTPFLPITPLLPDILASLAERPRLVLEAPPGAGKTTQVPLALLDATWLAGGRIVMLEPRR
IAARAAAAYMAAQLGEQVGETVGYRIRFESRVGPRTRIEVVTEGILGRMIQQDPSLEGIG
AILFDEFHERHLAGDLGAALALDVQSGLRPDLRLLVMSATLDGERIARWLDAPRLSSPGR
SFPVSITHSPVRPQETIEQHLVRTVRQALREHPGDVLAFLPGRREIERARSMLEKQGDDL
EVVALHGELSLAEQQLALSPADAGVRRVVLATNVAESSVTLPGIRAVVDAGLAREPRFDP
PSGFTRLETVNISQASADQRAGRAGRVAEGAAYRLWPQSRRLEPSRTAEIEQAELSGLAL
ELAGWGSDNLPWLDAPPAGAMGQARDLLRRLGALDEASAITRLGRDMLALGATPRLAAAA
LRAAPERRALVADLLALTEARSPLRGEQGRTDDFRQRVAALHLWRDAGARGARAGSADIG
ALAAIEKASAGWRRRLEIRSSASGVPDSHAVGDLLVHAFPDRVARRDEGQPMRYQLANGR
GARLHEASALLGEPWLVILDLRLDARDSLVFAAAPFDPEVLERDHADRFVTERVMRWDDE
RQIAEAFEERRFDALVMSRKAIPLRGDDAVPALLAGIRARGIGSLPWSDNARRLRARIGA
LRVWRPELHLPDVADATLLQSLESWLSSYLSGKRRLEALQAAELSEALSSMLDYEQRRAL
DVHAPEELKVPSGMTRRLEYGTRDDDPGAPPVLAVKLQELFGLADTPRVGDGRMPVMLHL
LSPAGRPIQVTQDLAGFWNRTYPEVKKELKGRYPRHPWPDDPWTAAATHRAKPRGT
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atgactccctttctcccgattactccgctgctccccgacatcctcgcctctctggcagag
cgtccacgactcgtgctggaggcgcctccgggcgcgggcaagacaacccaggtaccgctg
gccttgctcgatgcgacgtggctggcgggcggccgcatcgtgatgctcgagccgcgtcgt
atcgcagcgcgcgccgctgcggcctacatggcggcgcagctcggtgaacaggtcggcgaa
accgtgggttatcgcatccgcttcgagtcgcgcgtggggcctcgtacgcgcatcgaagtc
gtcaccgaaggcattctcgggcgcatgatccagcaggatccgagcctggagggtatcggt
gcgatcctgttcgacgagttccacgaacggcatctggccggtgacctgggcgcggcgctt
gcgctcgacgtccagtccggcctgcgcccggatctgcgcctcctggtcatgtcggcgacg
ctggacggcgagcgcatcgcacgatggctcgatgcgccccgtctgagcagtcccggccga
agcttccccgtatccatcacgcattcacccgtgcggccgcaggagacgatcgagcagcat
cttgtgcgtaccgtgcgccaggcgctgcgtgagcatcccggcgatgtgcttgcctttctt
cccggccggcgcgagatcgaacgcgcccgcagcatgctggaaaaacagggcgacgatctc
gaggtcgtcgccctgcacggtgagctttctctggccgagcagcaactcgcgctgtcaccg
gcggatgccggcgtgcgtcgcgtggtgctcgcgaccaacgttgccgaatcgagcgtgacc
ttgcctggtatccgtgccgtggtcgatgccggtctcgcgcgcgagccacgcttcgatccg
ccgtccggctttacgcgcttggaaaccgtcaacatctcgcaggcctcggcggatcagcgc
gcgggtcgcgcaggtcgtgtcgccgagggtgccgcctatcgactctggccgcaaagccgc
cgtctcgagccgtcgcgcacggcggaaatcgagcaggccgaactctccggccttgcgctc
gaactggcggggtggggcagcgacaacctaccctggctggatgcgccgccggccggtgcc
atgggccaggcacgcgatctgttacgtcgcctcggcgcgctcgacgaagcctccgccatc
acgcgccttggtcgcgacatgctggcgcttggcgcaacgccgcgcctggcggccgccgcc
ttgcgcgcagccccggagcgacgcgccctggtcgccgacctgctcgcgctgaccgaagcc
cgttcgccgctgcggggggagcaggggcgcactgatgacttccgccagcgcgtggccgcc
ttgcatctctggcgcgatgccggcgcgcgtggcgcgcgcgcggggtcggcggacatcggt
gcgctcgccgcgatcgagaaggcatcggcgggatggcgaaggcgattggagatccgatcc
tcagccagcggcgtgccggattcacacgccgtcggtgatctcctcgtgcacgcgtttccc
gatcgcgtcgcacgtcgcgatgaaggccagccgatgcgctatcaactggccaacggtcgt
ggtgcacgcttgcatgaggcgagtgcgttgcttggcgagccctggctggtcatcctcgac
ctgcgcctcgacgcgcgcgacagcctcgttttcgccgcggcgcctttcgacccggaggta
ctcgagcgcgaccacgcggatcgcttcgtcaccgagcgggtcatgcgatgggacgacgaa
cggcagatcgccgaggccttcgaagaacgacgcttcgatgccctggtgatgtcgcgtaaa
gccattccgctaaggggtgacgatgccgtgcccgcactgctggcgggcatccgtgcacgg
ggcatcggcagcctgccatggagcgacaacgcgcgtcggctgcgtgcacgcatcggcgca
ttgcgcgtgtggcgacccgagttgcacctgcccgacgtcgccgatgccacgttgttgcaa
tcgctcgagtcgtggctgtcctcgtatctctcgggcaagcgtcggctcgaggccttgcag
gcggcggagctgtcagaagcgctctcgtccatgctcgactacgagcagcgtcgtgcgctc
gacgtgcatgccccggaagaactgaaagtccccagcggcatgacgcgtcgactggagtac
ggaacacgcgacgacgatccgggcgcgccgccggtgctcgccgtgaagctacaggagctg
ttcggccttgccgacacaccgcgcgtcggcgacgggcgcatgccggtcatgttgcacctc
ttgtcgcccgccggtcgtcccatccaggtgacacaggaccttgctggtttctggaaccgg
acctatccggaagtgaagaaggagctgaagggccgctatccgcgacacccctggcccgac
gatccctggacagcggcagcaacacatcgagcgaaaccgcgcgggacctga
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