Luteibacter rhizovicinus DSM 16549: BJI69_05325
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Entry
BJI69_05325 CDS
T04563
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lrz
Luteibacter rhizovicinus DSM 16549
Pathway
lrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJI69_05325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrz03021
]
BJI69_05325
03019 Messenger RNA biogenesis [BR:
lrz03019
]
BJI69_05325
Transcription machinery [BR:
lrz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BJI69_05325
Messenger RNA biogenesis [BR:
lrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BJI69_05325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
APG03391
UniProt:
A0A1L3EQP8
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All DBs
Position
1155249..1157159
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AA seq
636 aa
AA seq
DB search
MSDIETKNPSDAKGAGDPPATEPRPRTRRKAPAAEAPAVATSAPAPAPAPAAARPPATVP
PLPPLPTPAPVPSPSPAPQAELQLNNAPQGNAQQGNEARPATAEARDGNGNGQPQGGQNQ
PMGRAENPNQPQNRHTNPNNPNNPNNPNNPNNAEREGRGRRRRNERNQQRQGGGGGNPGN
GGGGGGGGGNNYQSQRNNNGYPVDDDENADAGSNDRLINLTELKRKNAIQLLEFAESLGV
REGVARQRKQDVVFNILKAHARSGGGIWAEGVLEILQDGFGFLRSADESYLAGPDDIYVS
PSQIRRFNLRTGDYITGRVRHPKEGERYFAMLKVDDINGDPPEASKNKLLFENLTPLFPR
KSFKLERGNGSTEDITGRILDLVAPIGRGQRGLIVSQPKSGKTMMLQNIAQAIQYNHPDV
HLIMLLIDERPEEVTEIARTVRGEVISSTFDEPAVRHVQVAEMVIERAKRLVEHKKDVVI
LLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNVEEGGSLTIIATALTD
TGSKMDEVIYEEFKGTGNMEVHLSRRISEKRVYPAIDINRSGTRREDLLIEPDLLAKIWI
LRKLLHPMDELSAMEFMLDKMKNTKSNDEFFNSMKR
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgatatcgaaaccaaaaatcctagcgacgccaagggcgccggcgatccgcctgcg
accgagccgcgtccccgtactcgccgaaaggcacccgccgctgaagcacctgcggtagcg
acgagcgcgcctgctccggctcccgcacccgccgcggctcgtccgccggctaccgtgccg
ccgctgcctccgctgcccaccccggcaccggtacccagcccgtcgcccgcgccacaggcg
gagcttcagctcaataacgcaccgcagggcaacgcccagcagggcaacgaggcgcgtccc
gcgacggccgaagcccgcgacggcaacggtaacggccagccgcagggcggccagaaccag
ccgatgggccgggctgaaaacccgaaccagccgcagaaccgccataccaatccgaacaac
cccaacaacccgaacaacccgaataacccgaataacgccgaacgcgaaggtcgcggccgg
cgccggcgcaacgagcgcaaccagcagcgccagggtggcggtggcggcaatccgggcaac
ggtggtggcggtggcggtggcggtggtaataactaccagagccagcgcaataacaacggc
tatccggtcgacgacgacgagaacgccgacgccggcagcaacgatcgcctgatcaacctg
accgagctcaagcgcaagaacgccatccagctgctcgagttcgccgagtcgctcggtgta
cgcgagggcgtggcccgccagcgcaaacaggacgtggtcttcaacatcctcaaggcccac
gcccgttccggcggtggcatctgggctgaaggcgtgctcgagatcctgcaggacggcttc
ggcttcctgcgctcggccgatgagtcctacctggccggtccggacgacatctacgtctcg
cccagccagatccgtcggttcaacctgcgcaccggcgactacatcaccggtcgcgtccgc
catccgaaggaaggcgagcgctactttgcgatgctcaaggtcgacgacatcaacggcgat
ccgccggaggcgtcgaagaacaagctgctgttcgagaacctcaccccgctgttcccgcgc
aagtcgttcaagctcgagcgcggcaatggttcgaccgaggacatcaccggtcgcatcctc
gacctcgtggcgcccatcggtcgcggccagcgcggcctcatcgtgtcgcagccgaagtcc
ggcaagacgatgatgctgcagaacatcgcccaggccatccagtacaaccatccggacgtc
catctgatcatgctgttgatcgatgagcgccccgaggaagtgacggaaatcgctcgcacc
gttcgtggtgaagtcatcagctcgaccttcgacgagcccgccgtgcgccacgtgcaggtc
gccgagatggtgatcgagcgtgccaaacgcctggtcgagcacaagaaggacgtcgtgatc
ctgctcgactcgatcacccgcctggcccgcgcctacaacaccgtcgtaccgagctccggc
aaggtcctcaccggtggtgtcgacgccaacgccctgcagcgccccaagcgcttcttcggc
gcggcacgtaacgtcgaggaaggcggcagcctgacgatcatcgccacggcgctgaccgac
accggctcgaagatggacgaagtgatttacgaggagttcaagggcaccggcaacatggaa
gtgcacctgtcccgtcgcatctccgagaagcgcgtctacccggccatcgacatcaaccgc
tcgggcacccgtcgcgaagacctgctcatcgagccggacctgctcgccaagatctggatc
ctgcgcaagctgctccacccgatggacgagctcagcgcgatggagttcatgctcgacaag
atgaagaacaccaagtccaacgacgagttcttcaattcgatgaagcgctga
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