Luteibacter rhizovicinus DSM 16549: BJI69_12040
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Entry
BJI69_12040 CDS
T04563
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lrz
Luteibacter rhizovicinus DSM 16549
Pathway
lrz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lrz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BJI69_12040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrz03021
]
BJI69_12040
03400 DNA repair and recombination proteins [BR:
lrz03400
]
BJI69_12040
Enzymes [BR:
lrz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BJI69_12040
Transcription machinery [BR:
lrz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BJI69_12040
DNA repair and recombination proteins [BR:
lrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BJI69_12040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
APG04552
UniProt:
A0A0G9GZQ8
LinkDB
All DBs
Position
2673830..2678044
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAFVVIDPGLTALERGQLLSEDQYLEATEEHGDEFDARM
GAEAVYELLKSLDLPGEVIRLKEEITATNSETKLKRLTKRVKLIEAFLESGNKPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFAKLQARGEATTIKAAKKLVEREEAQVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA
RALMMSSNNILSPANGEPIIVPSQDVVLGLYYMTRELINVKGAGMVFANVAEVRRAYDNR
AVELHAKVKVRIHITEQDEEGATSSRTAIVDTTVGRALLMEIIPEGLPFALVNTELTKKN
ISRLINQSYRLLGLKESVVFADKLMYTGFRFATRAGISIGIDDMKIPAEKKGILEEAEKE
VVEIQEQYQSGLVTAGERYNKVVDIWSRTNELVAKAMIDGIGTEKVEDADGKTVNQKSMN
SLYIMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEHDCGTEDGVMMSPIVEGGDVVEPLRERVL
GRVVVEDVYAPGDDDQAIVTRDTLLDEYLVDKLDKASVQLIKVRSPITCRASHGVCALCY
GRDLARGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVTIRTTGALK
FNNLKSVEHSQGHLVAVSRSGEVSVIDSNGRERERYKVPYGATIAVKDGDPVKSGQTVAN
WDPHTHPIVTEVAGVVRFIDFIDGITVQSQTDELTGLESAVVTDPKRRGTQAKDLRPIVR
LEDSKGRELKLPGTDIAAQYFLPAGAIVSIQNGTEVGVGDVVARIPQETSKTRDITGGLP
RVADLFEARKPKEPAILAERSGIVSFGKDTKGKQRLIIKDVDGNEHEELIPKWRQVIVFE
GEHVEKGETVVDGEPNPHDILRLLGVEPLASYLVKEIQDVYRLQGVKINDKHIEAIIRQM
LRKVEITEAGDSTYLRGEQVERVRINEENDRAEKRGERRAGFESVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHASRRSQGGLTASEL
ETLSGSAPVVTFEEASAGSNDSAE
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaatctgttcaaccagcagcgacagacgctggacttcgacgcgatc
aagatcgccctggcttcgccggagctgatccggtcgtggtcgtacggtgaagtcaagaag
ccggaaaccatcaactaccgcacgttcaagcctgagcgtgacggtctgttctgcgcggcc
atctttggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggcgtggtctgcgaaaagtgcggcaccgaggtcacgctggccaaggtccgtcgtgag
cgcatgggccacatcgagctggccagcccgaccgcgcacatctggttcctgaagtcgctg
ccctcgcgcatcggcctcatgctggacatgaccctgcgtgatatcgagcgcatcctgtac
ttcgaagcgttcgtcgtgatcgatccaggcctgaccgcgctcgagcgcggccagctgctc
agcgaagaccagtacctggaagccaccgaagagcacggcgacgagttcgatgcccgcatg
ggtgccgaggccgtctacgagctgctgaagagcctcgacctgccgggcgaagtcattcgc
ctcaaggaagagatcacggcgaccaattccgagaccaagctgaagcgcctcaccaagcgc
gtgaagctgatcgaggcgttcctcgagtctggcaacaagccggaatggatggtcatgacc
gtcctccccgtgctgccgccggacctgcgcccgctcgtcccgctggatggcggtcgcttc
gcgacctccgacctcaacgacctgtaccgccgcgtcatcaaccgtaacaaccgcctgaag
cgcctgctcgaactcgctgcgccggacatcatcgtccgcaacgagaagcgcatgctgcag
gaatcggtcgatgcgctgctcgacaacggccgtcgcggtcgtgccatcaccggcacgaac
aagcgcgcgctgaagtcgctggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctgcgtctgcatcagtgcggcctgccgaagaagatggcgctcgagctgttcaagcccttc
atcttcgccaagctgcaggctcgtggtgaagccacgaccatcaaggccgcgaagaagctc
gtcgagcgcgaagaggcccaggtgtgggacatcctggaagacgtgatccgcgaacatccg
gtcatgctcaaccgtgccccgaccctgcatcgtctcggtatccaggcgttcgagccggtc
ctcatcgaaggcaaggcgatccagctgcatccgctcgtgtgtacggcattcaacgccgac
ttcgacggtgaccagatggccgtccacgtaccgctgtcgatcgaggcgcagctcgaagcc
cgcgccctgatgatgtcgtccaacaacatcctgtcgccggcgaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctcggcctgtactacatgacgcgcgaactgatcaacgtg
aagggcgccggcatggtgttcgccaacgttgcggaagtgcgccgtgcgtacgacaaccgt
gccgtcgaactgcacgccaaggtcaaggtccgcatccacatcaccgagcaggacgaagag
ggtgccacctcctcgcgtaccgcgatcgtcgatacgacggtcggccgtgccctgctgatg
gaaatcatcccggagggcctgccgttcgcgctggtcaataccgagctgacgaagaagaac
atctcgcgcctgatcaaccagagctaccgtctgctcggtctgaaggaatcggtcgtgttc
gccgacaagctgatgtacaccggcttccgtttcgcgacgcgcgccggtatctccatcggt
atcgacgacatgaagatcccggctgagaagaagggcatcctcgaggaagccgagaaggaa
gtcgtcgagatccaggagcagtaccagtccggtctcgtgaccgccggcgagcgctacaac
aaggtcgtcgacatctggtcccgcaccaacgaactcgtcgccaaggcgatgatcgacggt
atcggtaccgagaaggtcgaggacgccgacggcaagacggtcaaccagaagtcgatgaac
tcgctgtacatcatggcggactccggtgcgcgtggtagcgcggcccagattcgtcagctg
gcgggtatgcgtggcctgatggctcgtccggatggctcgatcatcgagacgcccatcaag
gcgaacttccgtgaaggcctgaacgtgctgcagtacttcaactccacccacggtgcccgt
aagggtctcgcggatacggcgctgaagaccgcgaactccggttacctcacccgtcgtctc
gtcgacgtggcgcaggacgtcgtcatcaccgagcacgattgcggcacggaagacggcgtc
atgatgtccccgatcgtcgaaggcggtgacgtggtcgagccgttgcgcgagcgcgtgctc
ggtcgcgtcgtggtcgaggacgtctacgcccccggcgacgacgaccaggccatcgtgacc
cgcgacaccctgctcgacgagtacctggtcgacaagctcgacaaggccagcgtgcagctg
atcaaggtgcgttcgccgatcacctgccgtgccagccatggcgtgtgcgcgctgtgctac
ggccgcgatctggctcgtggtcacttggtcaacatgggtgaggccgtgggtgtggtcgcc
gctcagtcgatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggt
gcggcgtcccgtgcggcagccgtcgataacgtcacgatccgcacgaccggtgcactgaag
ttcaacaacctgaagtcggtcgagcacagccagggtcacctggtcgccgtctcgcgttcg
ggcgaagtcagcgtcatcgattcgaacggtcgcgagcgcgagcgttacaaggtgccttac
ggcgccaccatcgccgtgaaggatggcgacccggtcaagtccggccagaccgtggccaac
tgggatccgcatacccatccgatcgtcacggaagtggcgggcgtggtgcgcttcatcgac
ttcatcgatggcatcaccgtgcagtcgcagacggacgaactgaccggcctcgagtcggcg
gtggtcaccgatccgaagcgtcgtggtacgcaggccaaggatctgcgcccgatcgttcgc
ctggaagacagcaagggccgtgagctcaagctgccgggtacggacatcgcggcccagtac
ttcctgccggccggcgcgatcgtgtcgatccagaacggaaccgaagtgggcgtgggtgac
gttgtcgctcgtatcccgcaggaaacctcgaagacccgcgacatcaccggtggtctgccg
cgcgttgccgacttgttcgaagcccgcaagccgaaggagccggcgatcctcgcggagcgt
tcgggtatcgtcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaaggac
gtggacggcaacgagcacgaggagctgattcccaagtggcgtcaggtcatcgtcttcgaa
ggcgagcacgtggagaagggcgaaaccgtcgtcgacggcgagccgaatccgcatgacatc
ctgcgcctgctgggtgtcgagccgctggcctcgtacctggtcaaggaaatccaggacgtc
taccgcctgcagggcgtgaagatcaacgacaagcacatcgaagcgatcattcgccagatg
ctgcgcaaggtcgagatcaccgaggcgggtgacagcacctacctgcgcggtgagcaggtc
gagcgtgtccgcatcaacgaggaaaacgatcgcgccgagaagcggggcgagcgtcgggcc
gggttcgagtcggtcctgttgggtatcaccaaggcgtcgctggccaccgaatcgttcatt
tcggcggcttcgttccaggaaaccacccgcgtcctcacggaagcggcggtccgtggcacc
cgcgacacgttgcgtggcctcaaggaaaatgttattgttggacggctaatccctgcgggt
acgggtctggcataccacgcatcgcgtcgtagccagggcggcctgacggcttcggagctc
gaaaccctctcgggttcggcaccggtcgtcacgttcgaagaggcctccgccgggtccaac
gatagcgccgagtaa
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