Luteibacter rhizovicinus DSM 16549: BJI69_14520
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Entry
BJI69_14520 CDS
T04563
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lrz
Luteibacter rhizovicinus DSM 16549
Pathway
lrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJI69_14520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrz03019
]
BJI69_14520
03009 Ribosome biogenesis [BR:
lrz03009
]
BJI69_14520
Enzymes [BR:
lrz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BJI69_14520
Messenger RNA biogenesis [BR:
lrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BJI69_14520
Ribosome biogenesis [BR:
lrz03009
]
Prokaryotic type
rRNA processing factors
BJI69_14520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
GPR128_GAIN_subdom_B
Motif
Other DBs
NCBI-ProteinID:
APG04987
UniProt:
A0A1L3EVD7
LinkDB
All DBs
Position
complement(3178703..3182215)
Genome browser
AA seq
1170 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQNLYDLDIEIPSREQKKANIYKGRITRVEPSLEACFVDY
GAERHGFLPLKEVAREYFNPNAEGKSNIRELLKEGQEIIVQVEKEERGNKGAALTTFISL
AGRYMVLMPNNPRAGGVSRRIEGEDRQALKEAMEHLSVPDDMGLIVRTAGMGRDAEELQW
DLDYLLQLWKSISGAANSQKAPFLIYQESKLFIRALRDYLRNDIGEILIDEEQLFSDARD
FVQQVMPNNLRKLKLYQDPTPLFSRYQIETQIESIFERNVRLPSGGSIVIDQTEALTAID
INSSKATKGSDIEETAFNTNLEAASEIARQLRIRDAGGLIVIDFIDMDSPRHQREVEERL
KDALKADRARVQIGRISRFGLLEMSRQRLRPSLGEATQIVCPRCEGHGHIRSVESLALST
LRLIEEHAMKENTGQVLVQAPPAVANFMLNEKRASVVEIELRHNVHVVVVADDKLETPHL
EITRIREADMGEHSKPSYERTTPVVAVALPKMGQALGSGEQPLVTGVVPSTPAPIRDDED
ETPAAPVAAAKARPVAAAPAAKGGFLSRLFGGLFGSSAPAAPAAEPAPARRDESRQGSGS
RNERNPRRDDRRGNEGRNKNNEQRQQGQRGERGERGERKDNAQQQPKGQQQAKGGNKQGR
GEPRQGEPRQGEEKQPRQPKEQQQGGRQGGRQGQEPQGQAGEGQGRRQPRGERQPQGEKV
EKIEKATTLVAGAAQTAAPGAVHVPAERPNAPLKDEEGVSPVITDEALTQVEGSLAADGS
APSTDTKDTEGGQRRRRGRRGGRRRRRQEDGTQAGSIEGGNADDLDDEDGDSDDVADTAP
ARTTRDSASVPPMLDTAAAAENAFAVGAPRNEATQPAAFATDDESVPSALTLGSLPKLPP
IPGTSAPVTSHAHPVDPATPADSAQTRTTERRQTESDAPLTSNPVSVEAPVPAPVAAAPV
APAPVAVAPAVEEPSIELATSAKQASVLDTPARGMLPDTTAETPVVEAAVETPAPVETPK
PVIAPATPTPTPTDAEIVVAAPEPTPMTPEAAAPKAGHASEPVVTPVAAPVQAPVSVSAP
VDAPAPAPTPAPVAVAAPVATPVDAPLPVVAPDAAPAPDAAPAPVAAPAPAPVAAPVPAP
APVVAPPAQGDLLTRPRQEPPHGDTPRDEH
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtatgttgatcaacgcgactcagcgcgaagagttgcgcgtggccatcgtcgat
ggccagaatctttacgatctcgatatcgaaatcccgtcccgggaacagaaaaaagccaac
atctacaaggggcgcatcacccgcgtcgagccgtctctcgaagcctgcttcgtcgactac
ggcgccgagcgccacggcttccttccgctgaaggaagtggcccgcgaatacttcaacccg
aacgcggaaggcaagtccaacatccgcgagctgttgaaggaaggccaggaaatcatcgtc
caggtcgagaaggaagagcgcggcaacaagggtgccgccctcaccaccttcatcagcctc
gccggtcgttacatggtgctgatgcccaacaacccccgtgccggtggcgtctcgcgccgc
atcgagggtgaagaccgccaggccctgaaggaagcgatggagcacctctcggtgcccgac
gacatgggcctgatcgtgcgtaccgccggcatgggccgcgacgccgaggagctccagtgg
gacctcgactacctcctgcagctctggaagtcgatctccggcgcagccaactcgcagaaa
gccccgttcctgatctaccaggaatcgaagctgttcatccgcgccctgcgcgactacctg
cgcaacgacatcggcgaaatcctgatcgacgaggagcagctgttcagcgacgctcgcgac
ttcgtccagcaggtcatgccgaacaacctgcgcaagctcaagctctatcaggatccgacg
ccgctgttctcgcggtaccagatcgaaacccagatcgagagcatcttcgagcgcaacgtc
cgcctcccctccggcggttcgatcgtcatcgaccagaccgaagccctgaccgccatcgac
atcaactcgtcgaaggcgaccaagggcagcgacatcgaagagacggcgttcaacaccaat
ctcgaagccgccagtgagatcgcccgccagctgcgcatccgtgacgccggcggcctgatc
gtcatcgacttcatcgacatggacagcccgcgccaccagcgcgaggtcgaagagcgcctc
aaggacgccctcaaggcggaccgcgcccgtgtccagatcggtcgtatctcccgcttcggc
ctgctcgagatgtcgcgtcagcgcctgcgtccgagcctcggcgaagccacccagatcgtc
tgcccgcgttgcgaaggccacggccacatccgcagcgtggaatcgctcgccctctccacc
ctgcgtctcatcgaagagcacgcgatgaaggaaaacaccgggcaggtcctggtgcaggcg
ccgcccgcggtcgccaacttcatgctcaacgagaagcgcgccagcgtcgtcgagatcgag
ctgcgccataacgtgcacgtggtcgtcgtcgccgacgacaagctcgagaccccgcacctg
gaaatcacccgtatccgcgaggcggacatgggcgagcacagcaagccgagctacgagcgc
accaccccggtggtcgccgtcgccctgccgaagatgggccaggccctgggcagcggcgag
cagccgctggtgaccggcgtggttccgtccacgccggcgcccatccgcgacgacgaagac
gagacgccggctgcaccggtcgccgccgccaaggcacgtccggtcgccgccgctccggcc
gcgaagggcggcttcctctcgcgcctcttcggtggcctgttcggttcctccgcaccggca
gccccggcggccgagccggcaccggcccgtcgcgacgaatcgcgccagggcagcggtagc
cgcaacgagcgcaatccgcgccgtgacgaccgccgtggcaacgaagggcgcaacaagaac
aacgagcagcgccagcagggtcagcgcggcgagcgcggtgaacgtggcgagcgtaaggac
aacgcgcagcagcagccgaagggccagcagcaggccaagggcggcaacaagcagggccga
ggtgaaccgcgccagggcgagccgcgtcagggcgaagagaagcagccgcgccagccgaag
gaacagcagcagggcggccgccagggcggtcgtcagggccaggagccgcagggccaggcc
ggcgaaggccagggccgtcgccagccacgcggcgagcgtcagccgcagggcgagaaagtc
gagaagatcgaaaaggccaccacgctggtcgccggtgctgcccagacggccgcaccgggt
gccgtgcacgtcccggccgagcggcccaacgctccgctgaaggacgaggaaggcgtgtcg
ccggtcatcaccgacgaggccctcacccaggtcgagggctcgcttgccgccgatggcagc
gcaccgtccaccgacaccaaggacaccgaaggtggccagcgccgtcgtcgtggccgtcgc
ggcggtcgccgccgtcgtcgccaggaagacggtacgcaggccggttcgatcgaaggcggc
aacgctgacgatctcgatgacgaggacggcgacagcgacgacgtcgccgataccgcgccg
gctcgcacgacgcgtgacagtgccagcgtgccgccgatgctcgatacggcagccgctgcc
gagaacgcgttcgccgtgggcgccccgcgcaacgaagctacccagcccgccgctttcgcc
acggacgacgagtcggtgccgtcggcactgaccctcggctcgctgcccaagctgccgccg
atcccgggcacgtccgctccggtcacgtcgcacgcccaccctgtcgacccggccacgccg
gccgactcggcgcagacacgtaccaccgagcgccgtcagaccgagtccgatgcaccgctg
acgtcgaatccggtgtcggtcgaggcgccggtgcccgcaccggtcgctgcggcgccagtc
gccccagcaccggtcgccgtcgccccggcggtggaagagccgtcgatcgagcttgcgacg
tcggccaagcaggcgtccgtgctcgacacgccggctcgcggcatgttgccggatacgacc
gctgagactccggtcgtcgaagccgctgtcgaaacaccggccccggtcgaaacgccgaag
cctgtcatcgctcctgccaccccgacgccgacaccgaccgacgcagaaatcgtcgtggcc
gcgcccgagccgacgccgatgactccggaagctgcggctccgaaagcaggtcatgcgtcg
gagccggttgtgacaccggtagcggcacctgtgcaggcaccggtttcggtttcggctccg
gtcgacgcaccggctccggccccgaccccggctccagttgcggtggcggctcctgtcgct
actccggttgatgcaccgctgccggttgtcgccccggacgctgctcctgccccggacgct
gctcctgccccggttgccgctccggcgcccgcgccggttgctgcacccgttccggcacct
gcccccgtcgtggctccgcccgcacagggtgacctcctgacgcgtccgcgtcaggaaccg
ccgcacggtgacacgccgcgcgacgagcactaa
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