Latilactobacillus sakei subsp. sakei: LCA_0805
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Entry
LCA_0805 CDS
T00299
Symbol
recD
Name
(GenBank) Exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lsa
Latilactobacillus sakei subsp. sakei
Pathway
lsa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LCA_0805 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsa03400
]
LCA_0805 (recD)
Enzymes [BR:
lsa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LCA_0805 (recD)
DNA repair and recombination proteins [BR:
lsa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LCA_0805 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
HHH_RecD2
OB_YrrC
UvrD_C_2
SH3_13
AAA_11
Viral_helicase1
UvrD-helicase
AAA_29
nSTAND3
UvrD_C
AAA_12
SLFN-g3_helicase
DEAD
Mg_chelatase
AAA
AAA_22
HTH_IclR
AAA_7
NTPase_1
AAA_28
AAA_16
Val_tRNA-synt_C
T2SSE
AAA_23
TsaE
Motif
Other DBs
NCBI-ProteinID:
CAI55109
UniProt:
Q38XH2
LinkDB
All DBs
Position
797333..799861
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AA seq
842 aa
AA seq
DB search
MAILETENMVDNKPTVTGTVQSVFYENPGNFFKILLIKIAHKTIDWHEPEIVVTGSFGEI
KEDERYTFYGKVITHPKYGQQFQADNYQVDQPTTKTGLVAYLSGEKFAGIGQKTAEKIVD
TLGLDAIDKILADSTVLAPLGLNDKKQATLVETLTINNGMEQIIIGLNNYGFGSSMAYNI
YQTYHEDTLKIIQENPYQLVADIAGIGFKRADNLAEKIGFAADSPARIQGALMQALNELT
NQAGDTFTQAKPLLAASIQLMEQARNVAIDPNLVAEQLMVLAHDGKVVGDENRIYPNGLY
NAEWQIANHLMRIENERDKISYPKHDLDKEIRRLEKRFKMSYDDVQKNAIKLAMTHRAFL
LTGGPGTGKTTIINGIVTLFAELNGLSLDINEYKDTPFPILLAAPTGRAAKRMSETTGLP
ASTIHRLLGITGRENNPDIDSKELEGGLLIVDEMSMVDTYLFRSLIRAVPSNMQVVFVGD
KDQLPSVGAGQVFFDLLQSQAIPAIELQQIYRQDDESTIIPLAHEINQGQLPADLLQPQK
DRSFIQCSPYQIESVIKQVVTKAKDRGFETKDIQVLAPMYRGAAGIDQLNPMIQNIMNPK
VDDRKKQVSLGNVHYRIGDKILHLVNSPELNVFNGEIGQITGITYAKDSDDKMDELTIAF
DSTEITYKRTEWHKITLAYCTSIHKAQGSEFEMVILPLVNQYQRMLKRNLLYTAVTRARS
LLILIGEPSAFDKAAKELSANRQTTLKERIISVFNGEKVSQAVKTASVGLTEAKPTVEKL
TPAKAAAPEQLALVDDADDSEETIQEAPANYELTPALVSGHQIDPMIGMADLTPYTFMTS
AK
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggcgattttggaaacagaaaatatggtcgataataaaccaaccgttaccggaacggtc
caaagtgttttttacgagaatcccggtaacttttttaagattctcttgattaaaattgcc
cataagacaatcgattggcacgagccagagattgtcgtgactggtagttttggtgagatt
aaagaagacgaacgctatacgttttatggcaaagtcatcacccatcctaaatacggtcaa
caatttcaagctgacaactatcaggttgaccaaccgacgactaagactggcttagtcgcc
tatttatctggcgaaaaatttgccggcattggtcaaaaaacggctgagaaaattgtcgat
accttaggattagatgcgattgataagatcttagcggactcaactgttttagcgccgctg
ggtttaaatgataagaaacaagcgacgttggttgaaacgctgacgattaacaatggcatg
gaacaaattatcattggtctcaataattacggttttgggagctcgatggcctataacatc
taccaaacttatcacgaagataccttgaagattattcaagaaaatccttatcaactagtg
gccgacattgccggtattgggtttaaacgagcggataatttagctgagaagattgggttt
gcagccgattcaccagcgcggattcaaggggcgctgatgcaagccttgaacgaactgacc
aatcaggccggcgatacgtttacccaggcgaagccgttattagcagccagcattcaattg
atggaacaggcccggaacgtggcgattgatccgaatttagtggcagagcaattaatggtc
ttggcacacgatggcaaagtcgttggtgatgaaaatcggatttatccgaatggtttgtac
aacgcggaatggcaaattgccaaccacttgatgcggattgaaaatgaacgggataaaatt
agttatcctaaacatgatctggataaagaaattcgccggctcgaaaaacgctttaagatg
agctatgatgatgtccaaaaaaatgcaattaaattagcgatgactcacagagcctttcta
ctaacagggggccctggtactgggaaaacaacgattattaatgggattgtgactttattt
gctgagttaaacggtctttcgcttgatatcaacgaatataaagacacaccattcccaatt
ttattggcagcgcctactgggcgggccgctaaacggatgagcgaaacaactggcttgcca
gctagcacgattcatcgcttattaggaattacgggacgtgaaaataatcctgatatcgat
agtaaggaactagaaggcggcttattaattgtcgatgaaatgtcgatggttgatacgtac
ctctttagatcattgattcgagcagtgcctagcaatatgcaagtcgtctttgttggtgat
aaagatcagttgccatcagttggcgcggggcaagtcttttttgatttactgcagagtcag
gcaattccggcaatcgaactgcaacaaatctatcgacaagacgatgagtcgacgattatt
ccgctagctcatgagattaatcagggccaactaccagccgatctactccaaccgcaaaag
gatcggagctttattcagtgcagtccttatcagattgaatcggtgattaagcaagtggtc
actaaagcaaaagaccggggctttgaaacaaaagatattcaggtgctagcaccgatgtat
cggggcgcagccggaattgatcaattaaatccaatgattcaaaatatcatgaatccaaag
gtcgatgatcgtaagaaacaagtcagtttaggtaacgttcattatcggattggcgataag
attttacatctggttaatagtccggaactaaacgtttttaacggtgaaatcgggcaaata
accgggattacgtatgctaaagatagtgatgacaagatggacgagttaacgattgccttt
gatagtaccgaaattacctataaacggacggaatggcataaaattacgttggcgtattgt
acgtcgattcataaggctcaaggttctgaatttgaaatggtaattctacccttggttaac
caatatcaacggatgctgaaacgaaacttgttgtatacagcagtgacacgggcgcggtcc
ttactgattttaattggggaaccaagtgcttttgataaggcggccaaggaactctccgca
aatcggcaaacaacgcttaaggaacggattatcagcgtctttaatggcgaaaaagtgagc
caagcggtcaaaaccgctagtgttggcttaacggaagctaaaccaactgttgaaaaacta
accccggctaaagcagcagcgccagaacaattggcattagtggacgatgcagatgacagc
gaagaaacaattcaagaagcacctgctaattatgaattaacaccagccttggtgagtggt
catcagattgacccgatgattgggatggcggatttaacgccgtacacattcatgacaagt
gctaagtag
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