Latilactobacillus sakei subsp. sakei: LCA_1242
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Entry
LCA_1242 CDS
T00299
Symbol
truB
Name
(GenBank) tRNA-specific pseudouridylate synthase (tRNA pseudouridine synthase B)
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
lsa
Latilactobacillus sakei subsp. sakei
Brite
KEGG Orthology (KO) [BR:
lsa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lsa03016
]
LCA_1242 (truB)
Enzymes [BR:
lsa01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
LCA_1242 (truB)
Transfer RNA biogenesis [BR:
lsa03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LCA_1242 (truB)
Prokaryotic type
LCA_1242 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
CAI55546
UniProt:
Q38W87
LinkDB
All DBs
Position
complement(1221469..1222386)
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AA seq
305 aa
AA seq
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MDGIIPLYKERGMTSNDCVFKVRRILHMKKVGHSGTLDPNVDGVLPICIGQATKVVDQLV
HSGKVYTGEITLGLSTTTEDLDGEVVEEQQLTEPISTEKIKETLASFLGESIQIPPMFSA
VKVNGRRLYDYARAGDPVERPQRKITITQFDLQGEPEFDAKTGRQTFRFIAGCSKGTYIR
TLAVDFGRKLGLPAVMSDLTRLKSGGIQIGSCVTLAQLAEAADNGQLADILIPLDHVFEE
NVKIALDDDQWAKILNGVFLTFPEQTEEILALTYEGHIKALYQVANAKQHLYRPYKMYLQ
NQGTH
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggacggcattatacccttatataaagaacgcggcatgactagcaacgattgcgttttt
aaagtacgacggattcttcatatgaaaaaagtggggcattctggaacgcttgatcccaat
gtagatggtgttttgccaatctgtattggccaagcaaccaaagtagtggaccaattggtg
cactctggtaaagtttataccggtgaaattacgttgggcttatcaacgaccactgaagat
ttagatggtgaagtcgttgaagaacaacaattaactgaaccaatttcaactgaaaaaatt
aaagaaacactggccagttttctaggggaatcaatccagattccaccgatgttctcagcc
gtaaaagttaacgggcgccgtctatacgattacgcacgggctggcgatcctgtggaacgc
ccacaacgcaaaattacaattacgcaatttgacttgcaaggcgaaccagaattcgatgca
aaaacgggtcgccaaacattccgctttattgcgggctgttcaaaagggacttatattcgg
actttagctgtcgattttggccgtaagttaggcttaccggcagtcatgtctgatttaacg
cgtcttaagagtggtggcattcaaattggcagttgtgttaccttggcacaactagctgaa
gctgctgataacggccaattagcggatattttgattccattagatcatgtttttgaagaa
aacgtcaagattgcgcttgatgatgatcaatgggccaaaattttaaatggtgtcttctta
acgttcccagaacaaacagaagaaatcttagccttaacttacgaagggcacatcaaggcc
ttgtatcaagtggctaacgcgaaacaacatctctaccgaccatataaaatgtatttacaa
aaccaagggactcattaa
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