Latilactobacillus sakei subsp. sakei: LCA_1604
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Entry
LCA_1604 CDS
T00299
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor (TRCF)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lsa
Latilactobacillus sakei subsp. sakei
Pathway
lsa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LCA_1604 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsa03400
]
LCA_1604 (mfd)
Enzymes [BR:
lsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCA_1604 (mfd)
DNA repair and recombination proteins [BR:
lsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LCA_1604 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
UB2H
RecG_dom3_C
IstB_IS21
DUF7398
Motif
Other DBs
NCBI-ProteinID:
CAI55911
UniProt:
Q38V73
LinkDB
All DBs
Position
complement(1588482..1592003)
Genome browser
AA seq
1173 aa
AA seq
DB search
MDLISMLGNTQQVQSVLENQKPGVRQLLTGLSGSAKTLFLATIYKQQRQPLLIIESNMFQ
ANQVAEDLANQLNGDQIYTFPVEEVMAAEIAVSSPESRAERVRTLSFLATGKKGIVVTSV
AGMRRLLPTARQWRDSQTQIEMGSEVDPKILGAQLAEMGYHRDKLVGKPGEFAMRGDIID
IFPLDTENPVRIELFDTEVDAIRSFEADTQRSIENLESVAIMPATDLLANAAQLEMAGEA
LQADYQQTAAKITAKDDQKALAVNFETPISRLLAGERLENLALFVDYLYPDHTSLIDYFK
NSGLVVFDDYPRIQETQRVLAEEAANWQTDMLGSRRLLPAQKLLVDVHHLMKQDQHPHLY
LSLFQKGMGKLKLDTLGNMPTRNVQQFFSQMPLLKTEMSRWQKQQQTVVVLVSDAKRVKK
IDQTFHDFEIEATVTTKTKLVAGQIQIVQGSLQNGFELPDLKLVVLTEKELFNTAPKKKV
RRQTLANAERLKSYSELKPGDYVVHVNHGIGEYVGMETLEVDGVHQDYITILYRDNGKLF
IPVTQLDMVQKYVSAESKTPKINKLGGAEWQKTKSKVSAKIEDIADDLIELYAQREAEKG
YAFPKDDQLQADFENQFAYPETDDQLRSTAEIKHDMEKVRPMDRLLVGDVGFGKTEVALR
AAFKAVAAGKQVAFLVPTTILAQQHYENMLARFADFPVELGLLSRFKTRKEVTATLKGLE
KGQVDIVIGTHRLLSKDVVFKDLGLLIVDEEQRFGVKHKERLKQLKAQVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPTNRYPIQTYVMEQNAGAMREAIERELERNGQVFYLHNRVS
DIEQTVDEIQALVPEATVGYAHGQMTEAQLEGVIYDFVQGKYDVLVTTTIIETGVDMPNV
NTMIVEDADHYGLSQLYQLRGRIGRSSRVAYGYFMYKPDKVLTEVSEKRLQAIKDFTELG
SGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGFDLYSQMLSEAVAKKQGKKVAAKTNAEID
LKLEAYLPDDYINDQRQKIEIYKRIRQMDTEAAFTEIQSDLIDRFGDYPVQVAHLLTIGQ
LKMNADDALIETIKQVKDKIQVVLSPKGSRLVSGEQIFEALSATRLKATVGFEQEKLSVT
LIIQPKMKTGDWLRELAIFVETLVEIEKKQLVK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggatttaatttcaatgttgggtaacacccagcaagtgcaatccgtattagaaaatcaa
aagccaggcgtcagacaactgcttacgggcctttcgggctcagccaagacgctttttttg
gcaacgatttataaacaacagcgtcagccgttattaatcattgaaagtaatatgtttcaa
gccaatcaggttgctgaagatttagccaatcagttaaatggggaccagatttatactttt
cctgttgaagaagtgatggcggccgaaattgcagttagttcaccggaatcaagagctgaa
cgtgtacgaacgttgagctttttggcgacgggtaaaaaaggaattgtcgtgacgtcagtt
gcaggaatgcgacggttattgccaacagcccgtcaatggcgcgatagtcagacccagatt
gaaatgggcagcgaagtcgatccgaaaattttaggcgcacagttagccgaaatgggctat
catcgcgataaattagtcggtaaacctggtgagtttgcaatgcggggcgatatcattgat
attttcccccttgatacggaaaatccagttcggattgaactgtttgataccgaagtcgat
gcgattcgttcgtttgaggcggatacccaacgaagtattgaaaacctcgagagtgtcgct
atcatgccggcgactgatctattagccaatgcggcacaactcgaaatggccggagaagca
ttgcaagccgattatcaacaaacagcagccaagataacggccaaagatgatcaaaaggcg
ttagccgtgaacttcgaaacgccgattagtcgattattggcaggcgagcgcttggaaaac
ttagcactcttcgtcgattacctttaccccgatcatacgagtctaattgattactttaaa
aacagcgggttagtggtttttgatgattatccccgcattcaagaaacacaacgcgtctta
gcggaagaagctgctaattggcagactgatatgttgggcagtcgccgcttactaccggca
caaaagctattagtcgatgttcatcatttaatgaagcaagaccaacatccgcatttatac
ttatccttattccaaaaagggatgggcaagctaaaactagatacgctcggcaatatgcca
acccgcaatgtacaacagttctttagccaaatgccattgttaaaaacggaaatgagccgg
tggcaaaagcaacaacaaacagtggtcgtcttagtatcagatgccaaacgagtgaagaaa
attgaccaaaccttccacgattttgagattgaagcgacggtcacgactaaaactaagttg
gtggctgggcagattcaaattgttcaaggctcattgcaaaatggctttgaactaccagat
ttaaaattagtcgttctgactgaaaaagaattatttaataccgcaccaaaaaagaaggtg
cgccggcaaacgttagccaatgcggaacgcttaaagagttatagcgaattaaaaccaggc
gattatgtcgttcacgtcaatcacgggattggtgaatacgtcgggatggagaccttggaa
gtcgacggcgtccatcaggattacatcaccatcttgtaccgggataatgggaaactgttt
attccagtgacacagttggacatggttcaaaaatacgtctcggctgaatccaaaacacct
aagattaataaattaggtggggcggaatggcaaaagactaagagcaaggtttccgctaag
attgaagatattgcggatgatttaatcgaattgtacgcgcaacgggaagccgaaaagggt
tatgcctttcctaaagatgatcaactacaagccgacttcgaaaatcagtttgcgtatcca
gaaacggatgatcaattacggagtacggccgaaattaagcacgatatggaaaaagtacgc
ccaatggaccgtttgttggtcggggatgttggttttgggaaaaccgaagttgccttgcgc
gctgcgtttaaagcagtcgcagccgggaagcaggtcgctttcttggtgcccaccacgatt
ttggcgcaacaacattatgaaaacatgctagcgcgatttgcggattttccagttgaactc
ggactgttatcacgatttaaaacgcgtaaagaagtgacggctacgcttaaaggcttggaa
aaagggcaagtggatatcgtcattgggacgcatcgtctattatcaaaagatgtcgtcttc
aaggaccttggcttattaattgtcgatgaagaacaacgatttggtgttaaacataaggaa
cgactcaaacaattaaaggcgcaagtcgatgtgttaaccttaacggcaacgccaattcca
cggacgttacacatgtcgatgttgggtgtgcgggatctttctgttattgaaaccccacca
actaaccggtaccccatccaaacctatgtgatggaacaaaatgctggtgcgatgcgagaa
gcgattgaacgggaattggaacgcaatggccaagtcttttacctgcacaatcgggtcagt
gatattgaacaaaccgtcgatgagattcaagcgcttgtgccagaggcaaccgtcggctat
gcgcatgggcaaatgacggaggctcaactagaaggggtcatttacgactttgttcaaggt
aagtatgatgtgttggtcacaaccacgattattgaaaccggggttgatatgcccaatgtg
aatacgatgattgtcgaagatgctgatcactacggcttatcccaactgtatcaattacgg
gggcggattggccggagtagtcgggtcgcttacgggtactttatgtataaaccggataag
gtgttgaccgaagtcagcgagaagcgtctgcaggccattaaagactttactgaattaggt
tccggcttcaaaattgcgatgcgtgatttatcgattcgaggcgccggtaacttattaggt
aaacaacaacacggctttatcgattcagtcggttttgatttatactcacaaatgctcagc
gaagcagtcgccaagaaacaaggcaagaaagtggcggctaagactaacgctgagattgat
ttgaagcttgaagcttacttgccggatgattatatcaatgatcaacggcaaaaaattgaa
atttacaaacgaattcgccaaatggatacggaagcggcctttacggaaattcagagcgat
ttaatcgatcgcttcggggattatcccgttcaagtcgcgcacctcttaacgattggccaa
ttaaaaatgaatgccgatgatgcgttaatcgaaacgattaaacaagtcaaagacaagatt
caagtcgtcttatcaccaaaagggagtcgcttagtttctggtgaacagatttttgaagcc
ttgtcagcaactcgcttgaaggcaacggtcggttttgaacaagaaaaattaagtgtgacg
ttaattatccaacctaagatgaagactggcgattggttacgtgagttggcgatttttgtg
gaaacactcgttgaaatcgaaaagaagcagttggtaaaataa
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