Loktanella salsilacus: KBK07_00040
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Entry
KBK07_00040 CDS
T08282
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lsal
Loktanella salsilacus
Pathway
lsal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KBK07_00040 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsal03019
]
KBK07_00040 (pnp)
03016 Transfer RNA biogenesis [BR:
lsal03016
]
KBK07_00040 (pnp)
Enzymes [BR:
lsal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KBK07_00040 (pnp)
Messenger RNA biogenesis [BR:
lsal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KBK07_00040 (pnp)
Transfer RNA biogenesis [BR:
lsal03016
]
Prokaryotic type
tRNA degradation factors
KBK07_00040 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
LTXXQ
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
UTH44534
LinkDB
All DBs
Position
complement(8692..10824)
Genome browser
AA seq
710 aa
AA seq
DB search
MFNEVKKSMQWGEETLTLETGKVARQADGSVIATLGETSVMANVTFARKQKPGQDFFPLT
VHYQEKYYAAGKVPGGFFKREARPTEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DMVNDPDMVAMIAASAALTISGAPFRGPIAACRVGFVDGDYILNPEIDDMHNLRNNPEQR
LDLVVAGTKDAVMMVESEAYELTEDEMLGAVTFAHNAIQPVIDLIIDLAEDAAKEPFDFT
PADYSALSAAVKAAGEDKMRAAYAITDKQERTSAVAQAKDDIIASLTEEQKEDSNLGPAL
KKLESSVLRGDVVKNGRRIDGRALDEIRPIVSEVGILPRTHGSALFTRGETQGLVVTTLG
TGDDEQMIDALTGMYKTNFMLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA
ATDFPYTIRIVSEITESNGSSSMASVCGGSLSMMDAGVPLKSAVAGVAMGLIMEDDGSYA
VLSDILGDEDHLGDMDFKVAGTENGITSLQMDIKIAGITPEIMKKALEQAKAGRLHILGE
MSKALTGAGSFSVHAPKIETMQIATDKIREVIGSGGKVIREIVEVSGAKVDINDDGVIKI
ASNDADKIKKAYDMIWSIVAEPEEGKIYKGTVVKLVDFGAFVNFFGKKDGLVHVSQIENR
RLNHPSDVLKEGQDVWVKLLGFDDRGKVRLSMKMVDQTNGTEMAEEASEG
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatgaagtaaagaagtccatgcagtggggcgaagagacgctcacacttgaaacg
ggcaaagtggcccgccaggccgacggttcggtcatcgccacgctgggcgagacgtccgtc
atggccaacgtgacattcgcgcgcaagcaaaagcccggtcaggactttttcccgctgacc
gtccactaccaagaaaagtattacgctgccggcaaagtgcccggtggtttcttcaagcgt
gaagcccgcccgaccgaaaaagaaacactgaccgcgcgcctgatcgaccgtccgatccgc
ccgctgttcgtccccggcttcaagaacgaagttctggtgatgtgcaccgtgctgtcgcat
gacatggtcaacgatcccgacatggtcgcgatgatcgccgcatccgctgcgctgacgatc
tctggcgcaccgttccgcggcccgatcgcggcttgccgcgtgggctttgtggatggcgac
tacatcctgaaccctgaaatcgacgacatgcacaacctgcgcaacaaccccgagcagcgc
ctcgatctggttgtcgcaggcacaaaagatgccgtcatgatggtggaatcggaagcttac
gagctgaccgaggacgaaatgctgggtgccgtgactttcgcgcacaacgcaattcagcct
gtcatcgacctgatcattgatctggccgaagatgccgcaaaagagccgtttgacttcacc
cctgctgactattccgcgctgtccgcagccgtgaaagccgctggcgaagacaaaatgcgt
gccgcttatgcgatcaccgacaagcaggaacgcacctctgccgtggcacaagccaaggac
gatatcattgcgtccctgacggaagagcagaaagaagacagcaaccttggccccgcgctg
aagaagctggaatcaagcgttctgcgtggcgatgtcgtcaagaacggccgccgtatcgat
ggccgcgcactggacgaaattcgtcccatcgtgtccgaagtcggcatcctgccccggacc
cacggttctgccctgttcacacgcggcgaaacccaaggtctggttgtcaccacgctgggt
accggcgatgacgagcagatgatcgacgcgctgaccggcatgtataagacgaacttcatg
ctgcactataacttccctccgtattcggttggtgaagtgggccgcgttggctcgccaggt
cgtcgtgaaattggccatggtaagctggcttggcgtgcgctgcaggccgttctgcccgct
gcgaccgacttcccctacaccatccgcatcgtgtcagagatcacagagtccaacggctcc
tcctcgatggcatcggtttgcggtggctctttgtcgatgatggacgcgggcgttccgctg
aagtccgccgtggccggtgtggccatgggtctgatcatggaagacgacggctcttacgct
gtgctgtccgacatcttgggcgacgaagatcacctgggcgacatggacttcaaagtggcc
ggtaccgaaaacggtatcacgtcgctgcagatggacatcaagatcgcaggcatcacgcca
gagatcatgaaaaaggcgctggagcaggccaaagctggtcgtcttcacatccttggcgaa
atgtccaaggccttgaccggtgcaggttcgttcagcgttcacgcgccaaagatcgaaacg
atgcagattgccaccgacaagatccgtgaagtcatcggttccggcggcaaagtcatccgc
gagatcgttgaagtgtccggcgctaaggtcgacatcaacgacgatggcgtgatcaagatc
gcgtccaacgacgcggacaagatcaagaaggcctatgacatgatctggtcgatcgtggca
gagcccgaagaaggcaaaatctacaagggtacggtcgtcaagctggtcgactttggtgcc
tttgtgaacttcttcggcaagaaggacggcctggtccacgtgtctcagatcgagaaccgt
cgcctgaaccacccgtccgacgtgctgaaagaaggccaggacgtttgggtcaagctgctg
ggctttgacgatcgcggcaaggtccgcctgtcgatgaagatggtcgatcagaccaacggc
accgagatggcagaagaagccagcgaaggctga
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