Loktanella salsilacus: KBK07_13965
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Entry
KBK07_13965 CDS
T08282
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lsal
Loktanella salsilacus
Pathway
lsal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KBK07_13965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsal03019
]
KBK07_13965
Enzymes [BR:
lsal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KBK07_13965
Messenger RNA biogenesis [BR:
lsal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KBK07_13965
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
HEM4
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UTH44166
LinkDB
All DBs
Position
complement(2857788..2859119)
Genome browser
AA seq
443 aa
AA seq
DB search
MDFDMLGLAPRLVAKLAEQGITDPTPIQSQAIPHAMNGRDVMGLAQTGTGKTAAFGLPMI
DALMKAGVKPNAKTARGLVLAPTRELAKQIADNLTDYTKGSHLKVALVVGGAGIAAQTKR
LQNGVDLLVATPGRLIDLLDRRAIRLDETIYLVLDEADQMLDMGFIHALRRIAPLLATPR
QTMMFSATMPKLMSELADAFLNDPVRVQVNPPGQAVAKIEQSVHFVAQAAKTDLLVDLLD
KHRDELALVFGRTKHGCEKLYKQLEAKGFAAASIHGNKSQGQRERAIEAFKSGKIRVLVA
TDVAARGIDIPGVRHVYNYDLPNVAENYVHRIGRTARAGADGAAIALVAPDEMIELKDIE
KAMKAEIPVASGRPWDILPGQKKRPNGGGGGGGRGRGGAGGGGGGRGKPAAAAGKPAGGK
PQGQRRRTGGGAGGGGGRGRTAA
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggattttgatatgctgggcctcgcgccccgccttgtggcgaagcttgccgaacaaggc
attactgacccgaccccaattcaatcgcaagccatcccgcacgccatgaatggccgtgac
gtgatgggcttggcgcagaccggcacgggtaaaactgctgcctttggtctgccaatgatc
gacgctttgatgaaggctggcgtaaagccaaacgccaagaccgcgcgcggcctggtgctt
gccccgacgcgcgagctggccaagcagattgcagacaacctaaccgattacaccaaaggt
tcgcacctgaaggtggctttggtcgtcggcggtgctggcatcgcggcgcaaaccaagcgt
ttgcagaacggcgtcgacctgctggttgcaacgcctggccgtctgatcgacctgctggat
cgccgcgcgatccgtctggacgaaacgatttatctggtcctcgacgaagctgaccagatg
ctggacatgggctttatccacgcgctgcgccggattgcaccgctgctggcgacgccgcgt
cagacgatgatgttctcggccactatgccgaaactgatgtccgaactggctgatgccttc
ctgaacgatccagtgcgcgtgcaggttaaccctccgggtcaggctgttgccaagatcgaa
cagtcggtgcacttcgttgcacaggctgccaagaccgacctgctggtcgatctgctggac
aagcaccgggacgagctggcgctggtctttggccgtaccaagcatggctgcgaaaagctg
tacaagcagctggaagcgaaaggctttgccgccgcgtccattcacggcaacaagtcccaa
ggtcagcgcgaacgcgcgatcgaggccttcaaatccggcaagattcgcgtgctggtcgcc
actgatgtcgctgcccgtggcatcgacattcctggcgtgcgtcacgtttataactacgac
ctgccgaacgtcgctgaaaactacgttcaccgcattggccgtacggcccgcgctggtgcc
gatggtgccgcgattgcactggtcgcacccgacgagatgatcgagctgaaggatatcgaa
aaggccatgaaggccgagattcctgtcgcatctggccgtccgtgggacattctgccgggc
cagaaaaagcgcccgaatggcggcggcggcggtggtggccgtggtcgcggtggtgctggc
ggcggcggcggtggccgcggtaagcctgctgctgcagcgggcaagcctgctggtggcaag
ccgcaggggcagcgtcgccggaccggtggcggtgctggcggcggcggcggccgtggtcgc
actgccgcttaa
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