Loktanella salsilacus: KBK07_15215
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Entry
KBK07_15215 CDS
T08282
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lsal
Loktanella salsilacus
Pathway
lsal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KBK07_15215 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsal03021
]
KBK07_15215 (rho)
03019 Messenger RNA biogenesis [BR:
lsal03019
]
KBK07_15215 (rho)
Transcription machinery [BR:
lsal03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KBK07_15215 (rho)
Messenger RNA biogenesis [BR:
lsal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KBK07_15215 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
AAA_22
ATPase_2
AAA_25
NACHT
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
UTH44391
LinkDB
All DBs
Position
complement(3115746..3117020)
Genome browser
AA seq
424 aa
AA seq
DB search
MSEHRLNLADLKAQSPKDLLAMAEELEIENASTMRKGDMMFAILRERADEEWLIGGDGVL
EVLQDGFGFLRSPEANYLPGPDDIYVSPDMIRQYSLSTGDTVEGTMKEPNDNERYFALKT
VEKINFEDPEKTKHKVAFENLTPLYPDERLKMEVDSEHDKKDRSARIIDLVSPIGKGQRS
LIVAPPRTGKTVLLQNIAHSIEKNHPEIYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDE
PATRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTTVPSSGKVLTGGVDANAL
QRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRV
FPAMDILKSGTRKEELLVEKSDLAKTYVLRRILNPMGTTDAIEFLIGKLKQTKTNADFFD
SMNT
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaacaccgtctgaaccttgctgacctgaaggcccaaagccccaaggatcttttg
gcgatggctgaagagctggaaatcgaaaacgcctcgacgatgcgtaaaggcgatatgatg
ttcgctattttgcgcgagcgtgctgacgaggaatggttgatcggcggcgacggtgttctg
gaagttttgcaggacggtttcggatttctgcgctcgccagaagcaaactatctgccgggg
cctgacgacatctacgtctctcctgacatgatccgccagtattcgctgtcgacgggcgat
actgttgaggggaccatgaaggaacccaatgataatgaacggtattttgcgcttaagacg
gttgaaaaaatcaactttgaagacccggaaaaaaccaaacacaaggttgctttcgagaac
ctgacgccgctttatccggatgagcgactgaagatggaagtcgatagcgagcacgataag
aaggaccggtctgcacgtattatcgaccttgtgtcgccgatcggtaagggtcagcgttcg
ctgattgttgcaccgccgcggacgggtaaaactgtgctgctgcagaacatcgcgcactcg
attgagaagaaccatcctgagatttatctgatcgttcttttgatcgacgaacgccccgaa
gaagttacagatatgcagcgcagcgtgaagggcgaggtcgtgtcctctacctttgacgag
ccggcaacgcggcacgttgctgtgtccgaaatggtgatcgaaaaggcaaagcggctggtc
gagcataaacgcgacgtcgtcatcttgcttgattcgattacgcgtttgggtcgtgcattc
aacacaactgtgccctcgtccggtaaggttctgaccggcggcgtcgacgcgaatgctctt
caacgccccaagcggttctttggtgctgcgcggaatatcgaagagggtgggtcgctgacg
attattgcgacggcgctgatcgacacaggtagccgaatggatgaagtgatctttgaagaa
ttcaaaggtacgggtaactctgaaatcgtgttggatcgcaaagtcgctgataagcgggtt
ttccccgcaatggatatcttgaaatccggcacccggaaagaagagctgttggtcgaaaag
tcggatctggcgaaaacttatgttctgcggcgcattttgaacccgatgggcacaacagat
gcgattgaattcctgatcggaaagctgaagcagacgaagaccaatgctgacttcttcgat
tcgatgaacacctga
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