Littorina saxatilis: 138947299
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Entry
138947299 CDS
T10665
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
lsax Littorina saxatilis
Pathway
lsax04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138947299
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lsax00536
]
138947299
Glycosaminoglycan binding proteins [BR:
lsax00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
138947299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
138947299
NCBI-ProteinID:
XP_070174849
LinkDB
All DBs
Position
LG14:19272521..19327577
Genome browser
AA seq
1404 aa
AA seq
DB search
MNKAACVTAFVAAIVIFVEAQGPNECRDDITGTIVKDGEVWFPYPEDDPCYQCTCAGGQP
ANCVYKQCAEITVCPDGSEPYKEPGECCLQCPDDVKEVDRREGVREVSRGETSVSDTAEY
GVQNQQPQGGDKAAPAYSGGQGYYSPGPPGPRGSPGPPGPPGQPGFQGPRGENGDPGPPG
SPGMRGFPGQPGPQGQDGDEGMPGDNGPPGPVGPSGPNGPPGMPGMPGPKGHRGFPGRPG
RDGEAGRDGEKGPSGPSGPIGAPGPNGARGAPGERGRDGSSGAPGIRGNDGSPGSSGPPG
PIGPPGTSGFPGAAGTKGDRGEGGQSGSPGPSGPAGSDGLPGAPGPVGQAGVRGEDGSSG
SKGARGAIGSAGPAGFPGPMGPPGTAGPPGPPGTNGNDGRDGNDGSPGDPGQQGNNGAPG
ERGLPGLPGLEGKRGPLGAAGPPGPAGSQGEAGQPGTSGLPGRPGFPGSPGKDGARGMEG
ERGPAGSPGAQGAGGPPGPSGQRGSPGFPGNDGSPGERGSPGNDGLDGGPGEQGPQGQPG
PPGLQGGPGSRGESGPEGRTGPQGNLGPSGPRGERGPSGEAGQEGQPGRPGSQGEAGPQG
NPGEAGFQGLPGPPGPSGENGRPGETGSTGPSGEGGAPGERGERGFPGEVGQSGTRGPPG
ERGPGGPVGEVGMPGPGGPPGARGDPGPVGSIGLGGERGVPGRAGPRGAPGPSGESGRDG
ELGPPGESGPPGLPGLPGPSGIVSAKGDRGPPGPGGEGGGPGSAGRPGPPGQQGPQGNSG
LPGVPGESGPPGEGGAPGVRGDTGGRGYPGEAGPAGEPGRPGTDGGKGDDGEPGLAGPSG
QPGQPGTAGAPGLSGPPGPPGNSGPQGSPGERGSSGETGPPGNSGESGSPGLPGLDGTPG
ERGSPGLSGPPGPAGVTGPQGERGANGFPGSAGEAGPAGPVGNPGESGLRGEDGKDGSPG
ATGPPGQPGSSGYPGESGQPGERGQDGVPGLPGRSGSKGSRGNPGPPGPPGLSGPGGPPG
ATGSPGPSGERGERGERGNGGPMGQQGPLGPAGAQGMIGPSGRPGRAGTKGDKGWPGLPG
NGGPPGPPGGNGEPGAGGPPGPPGPQGSSGNRGLPGRNGEPGQQGRPGSTGPRGPSGDDG
PSGPSGPRGPAGPPGPPGYAPVYPGAQSFGQQKGPDPYVQYDQALDTIEAYEGLNFASEA
LQRLRRPTGKSTSPGLTCRDIAEHNPDFKNGEYWIDPNGGTARDAILVYCRMESMQTCIR
PSPSQFDRARWTNDESDGQYFMDQINKNKEFFYKTDFSQLKFLQLYSEAARQVLTYHCLN
SLAYGTRLVLYTGDDLDTVEAKYKKSTKLFAQDDCDVKDNQWHTAVYDVRTNKTDILPIT
DVLLFDIGHQNQQFGIELGEVCFS
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaataaggcagcgtgtgtgacggccttcgtggccgccattgtgatatttgtggaggcg
caggggcctaacgaatgcagggacgatatcacgggtacgatagtgaaggatggggaggtg
tggttcccctacccggaggacgacccttgttatcagtgcacgtgcgcgggagggcaaccc
gccaactgtgtgtacaaacagtgtgcagaaattacagtgtgcccggacggctccgagcct
tacaaggagcccggcgagtgctgtctccagtgcccggatgacgtcaaagaggtcgacagg
agagagggtgtccgagaggtgtcacggggagagacgtctgtatcggatacggcagaatac
ggagttcagaaccagcaaccccaaggtggcgataaggctgccccggcttacagtggcggc
caaggatactactcccctggacctcccggaccgcgtggatcccccggaccccctggaccc
cctggccaacctggattccaaggcccccgtggtgagaatggagatcccggcccgccgggt
tccccaggtatgcgcggattccctggccaacccggcccccaaggccaggacggagatgag
ggtatgcctggcgacaacggacctcctggacccgtaggaccctctggccccaacggaccc
cctggcatgcctggaatgcctggacccaaaggacatcgtggattccctggtcgacctggt
agagacggagaagctgggcgtgatggagagaagggcccatctggaccatccggacctatt
ggtgctcccggtcccaacggtgctcgtggtgctcctggagagagaggaagagacggctca
tcgggtgctcctggtatccgtggtaacgatggttcccctggaagctctggaccccccgga
ccaattggaccacccggaacttcgggatttcccggtgccgctggaaccaagggagaccgt
ggagaggggggacagagtggaagcccaggaccctcgggtcccgccggatctgacggactg
cccggagcacctggacccgttggtcaggctggtgtgcgtggtgaggacggttcctctgga
tccaaaggagcaaggggcgccattggttctgccggacccgctggctttcccggtcccatg
ggaccccccggaaccgctgggccacctggacctcccggcacaaacggaaatgacggacgt
gacggcaacgacggctccccaggagacccgggccagcaaggtaacaacggggcaccagga
gaacgaggactgcccggtctgcccggactggaaggaaagaggggacctctcggcgctgcc
ggacctcccggacctgccggatcccaaggagaagccggacaacccggaacttccggtctt
cccggccgccccggattcccaggatcccctggcaaagatggcgcccgtggaatggagggt
gaacgaggtcccgctggtagccccggtgcacaaggagctggtggaccccccggaccgtca
ggacagagaggatcccctggattccccggcaacgacggatcgccgggtgagcgtggttct
ccgggtaacgacggcttagacggcggtcccggagaacagggcccccagggacaacctggt
cctcctggtctgcaaggcggccccggttctcgcggtgaaagtggccctgaaggccgaact
ggtccacagggtaaccttggcccatccggtccccgtggtgagcgtggtccctccggagag
gctggacaggagggtcaacctggtcgacctggatctcaaggagaagccggtccccagggc
aaccccggagaggctggattccagggtctgcccggtccccctggaccctctggtgagaac
ggacgtcctggtgaaactggttctaccggtccatctggtgagggtggagctcctggagag
agaggagagcgcggtttccccggtgaggttggtcagtctggtacccgtggtccccctggc
gagagaggccctggtggacccgtcggtgaagtcggcatgcctggacccggtggacctccc
ggtgcgcgtggtgaccctggtcctgttggcagcattggtcttggaggagaacgtggcgtt
cccggacgagctggacctcgtggtgctcctggtccctcaggagagtcgggacgtgatggt
gaactgggaccccctggtgaatccggaccccctggacttcccggtcttcctggaccctct
gggatcgtttctgccaaaggagatcgcggcccccccggtcctggtggtgagggaggtggc
cccggatctgctgggcgacccggtccccctggtcaacaaggaccccaaggaaactctgga
ctgcctggtgtacctggtgaatctggacccccgggagagggtggagcccccggcgttagg
ggtgacacaggaggtcgtggttatcccggagaagcaggccctgctggtgaacctggaagg
ccaggaacggacggaggtaagggtgacgacggagagccaggtctggcaggaccctccggt
caaccaggtcagcctggtaccgctggagcaccgggtctctctggaccacccggaccacct
ggaaattcaggaccccaaggatctcctggagagcgcggttcttccggtgagacgggacct
cccggtaactcaggtgaatcaggttcccctggtctgcctggtcttgatggtacacctggc
gagcgcggatctcctggtctttctggcccacccggcccagcaggagtgaccggaccacaa
ggcgaacgcggcgcaaacggcttccctggctctgctggtgaggctggccctgctggccct
gttggcaaccccggcgaatctggattgcgtggagaagacggcaaagatggatcacctggc
gctacgggtccacccggtcagcctggctcctctggctaccctggtgaatctggtcagcct
ggtgagcgtggccaagatggagtgcccggtcttcccggaagatctggaagcaaaggaagc
cgtggcaaccctggaccccccggacctcctggtctttctggacctggcgggccccctggc
gcaacaggatcacctggaccttctggcgagcgcggtgagaggggtgagcgcggtaatggc
ggacctatgggacaacagggacctctgggccctgctggagctcaaggtatgatcggacca
tcaggacgaccaggcagggctggaaccaagggagacaagggatggcctggactgccaggc
aacggcggacctcctggaccccctggaggtaacggtgaacccggagcgggtggacctccc
ggacctcctggaccacagggatcctccggaaatcgcggattgccaggacgtaacggcgag
cccggacaacaaggccgacctggaagcactggacctcgtggaccatctggcgatgatgga
ccatctggaccgtccggaccccgcggacctgccggaccacctggacctcccggatatgcc
ccagtctacccaggtgctcagtcattcggccagcagaagggacctgacccatacgtccaa
tacgaccaggccttggatacaattgaggcttacgaaggtctgaactttgcaagtgaagcc
ctgcagcgtctgcgtcgtcccactggcaaatcaacaagccctggcctcacctgccgcgac
atcgcggagcacaatcctgacttcaagaatggtgaatactggatcgaccccaacggaggc
acagctagggatgccatcttggtctactgtcgcatggagtccatgcagacttgcatccga
cccagcccctcccagtttgaccgcgccagatggaccaatgatgaaagcgatggacagtac
ttcatggaccaaattaacaagaataaggagttcttctacaagaccgacttcagccagctg
aagttcctgcagctgtactcagaagctgcccgccaggtgctcacctaccactgcctcaac
agtttggcctacggcacacgcctcgtgctctacactggagatgacctcgacaccgtggag
gccaaatacaagaaatccaccaagctgtttgcccaggacgactgtgatgtcaaggacaac
caatggcacaccgccgtctatgacgtccgtaccaacaaaacggacattctgccaatcaca
gatgtcctcctattcgacataggccatcaaaaccaacagttcggtatcgaattgggagag
gtgtgcttcagttaa
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