Littorina saxatilis: 138948511
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Entry
138948511 CDS
T10665
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lsax Littorina saxatilis
Pathway
lsax03013
Nucleocytoplasmic transport
lsax03015
mRNA surveillance pathway
lsax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138948511
09122 Translation
03013 Nucleocytoplasmic transport
138948511
03015 mRNA surveillance pathway
138948511
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138948511
03041 Spliceosome [BR:
lsax03041
]
138948511
Enzymes [BR:
lsax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138948511
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
138948511
Spliceosome [BR:
lsax03041
]
Complex C
Other components
EJC/TREX
138948511
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
138948511
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
BRCT
ResT-TelK_cat
Motif
Other DBs
NCBI-GeneID:
138948511
NCBI-ProteinID:
XP_070176165
LinkDB
All DBs
Position
LG15:11225684..11236153
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AA seq
427 aa
AA seq
DB search
MADDTAEENILDYEDEENETVVEGATGDGPPKKDVKGTYVSIHSSGFRDFLLKPELLRAI
IDCGFEHPSAVQHECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMA
HTRELAFQISKEYERFSKYTNNVKIAVFFGGMPVKKDEEVLQKNCPHIVVGTPGRLFALA
KAKTLNLKNIKHFILDECDKMLADLDMRRDVQEIFRMTPHEKQVMMFSATLSKDVRPICK
KFMQDPMEVYVDDDSKLTLHGLQQHYCKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQRC
MALAQLLLEQNFPAIAIHRLMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQERFEVNITELPDEIDI
SSYIEGR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgataccgcagaggaaaacattttggactacgaggatgaggaaaatgaaacg
gttgtcgaaggggcaactggcgacggcccacccaagaaagatgtgaagggaacctatgta
tcaattcacagctctggcttccgagattttctcctcaagcctgagttgttgcgtgccatc
attgactgtggttttgagcatccttcagcagttcagcacgagtgcatcccgcaggctatc
ttatccatggatgtgctttgtcaagccaagtctggcatgggaaagacagctgtcttcgtt
cttgccacactgcagcaacttgagcctgtggatggacaggtgtcagtactggtcatggct
cacacacgtgagctggctttccagatcagcaaagagtatgagcgcttcagcaagtacacc
aacaacgtgaagatcgccgtcttcttcgggggcatgccagtgaagaaggacgaggaggtg
ttgcagaagaactgtccccacattgtggtgggcaccccaggacgtctgtttgctctggcc
aaggccaagacgctcaacctcaagaacatcaaacatttcattctggacgagtgcgacaag
atgttggctgaccttgacatgcggcgtgacgttcaggagatcttccgcatgacgccccac
gagaagcaagtgatgatgttcagcgccaccctcagcaaagatgtccgccccatctgcaag
aagttcatgcaagatcccatggaggtgtatgtggacgatgactccaagctgacccttcac
ggactgcagcagcattactgcaagctgaaagacaacgagaagaatcgcaagctctttgag
cttcttgacgtgctggaattcaaccaggtgatcatctttgtgaagagcgttcagcgctgc
atggccctggcacagctgctgctggagcagaacttccccgccatcgccatccacaggctc
atgacacaagaagagaggttgtcacggtaccagcagttcaaggatttccagaagcgaatc
ctggtggccaccaacctgtttggccgtggcatggacatcgagagagtcaacatcgtcttc
aactacgacatgccggaggactcagacacctaccttcacagggttgctcgtgctggtcgg
tttggcaccaagggtctggccatcacctttgtatctgatgagaacgacgccaaaatcctc
aatgacgtccaggagcgctttgaggtcaacatcacggaactgcccgacgagatcgacatt
tcttcctacattgagggacgttaa
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