Littorina saxatilis: 138949177
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Entry
138949177 CDS
T10665
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lsax Littorina saxatilis
Pathway
lsax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138949177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138949177
03041 Spliceosome [BR:
lsax03041
]
138949177
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
138949177
Spliceosome [BR:
lsax03041
]
Complex B
Other components
Prp19-related factors
138949177
Complex C
138949177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_19
TPR_8
TPR_12
TPR_2
NRDE-2
TPR_15
Mad3_BUB1_I
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
138949177
NCBI-ProteinID:
XP_070177050
LinkDB
All DBs
Position
LG15:35882336..35945142
Genome browser
AA seq
850 aa
AA seq
DB search
MPVSEEKQAPDIFFEEEDVAYEEDILRNPYSVKCWLRYIEFKKEASKEVINTIYERALKQ
LPGSYKLWYNYLKVVRRQVRGRCVTDPAYEDANSAFERALVFMHKMPRIWIDYVQFLMDQ
GKITRTRRTFDRALRALPVTQHNRVWPIYLKFVRLHDLPETAVRVYRRHLKLQKENAEEY
IDYLISIGWLDEAAIRLADIINEETFVSKEGKSKHQLWNELCELIAENPNKVTSLKIEPI
IRQGLKRYTDQIAALWNSLADYYVRGAHMERARDIYEEAIQTVITVRDFTQVFDAYAQFE
KSSIASKMEAMEETGATEEDDLELELRLARLESLMDRRPLLLNSVLLRQNPHNVHEWHKR
VKLFEGKPQEIINTYTEAVQTVDPKQASGKPHTLWVEFAKFYEDAGQLEDARLIFSKAVQ
VDYKHVDDLASVWCEWAEMELRHENSEEALKLMQKATTPPPRKVAYHDETETVQARVHKS
LKVWSLYADLEESFGTFKSCKAVYDRILDLRIATPQIIMNYGMFLEENNYFEEAFKAYEK
GIALFKWPNVFDIWNTYLTKFIQRYGGSKLERARDLFEQCLDGCPDKFAKAIFLLYAKLE
EEHGLARHAMSVYDRATKAVLPEEQHEMYNIYIKRAAEIYGITHTRSIYEKAVEVLHNEQ
AREMCVRFADLERKLGEIDRARAIYAHGSQMADPRVAGQFWDAWKEFEINHGNEDTVREM
LRIKRSVQATYNTQVNFMSAQMIAASSLKKEEMAAGGAESSMQQLEARARQLAEESMQEK
AAAEKKLLFVRSTTTDEELGEMTKTHNPEEIDIDDDSDEDEEVEEMELHQQPVPSQVFGG
LAEEAERDDD
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtttcagaagaaaaacaagcaccggacatatttttcgaagaagaagatgtggct
tatgaagaagacatccttagaaatccctactctgtgaaatgttggctacgttacattgaa
ttcaagaaagaagcttctaaagaggtcatcaacaccatctacgaacgtgccctcaaacag
ctcccaggaagttacaagctgtggtacaattacctgaaggtggtgaggaggcaggtcaga
gggcgctgtgtgacggacccagcatatgaggacgccaacagtgcctttgagagagcgctt
gtcttcatgcataagatgcctcggatctggattgactatgtccagtttttaatggaccaa
gggaagataactcgcactcgtcgcacatttgaccgtgccctgcgagccctgccagtcact
cagcacaaccgcgtgtggcctatctacctcaagtttgtcaggctgcatgacctaccagag
acagccgtgcgggtctataggaggcatctcaagttgcaaaaggagaacgcggaggagtac
attgattacctcatttccattggttggctggacgaggctgccattcgtctggctgacatc
atcaacgaggaaacttttgtttccaaggaaggcaaatccaaacaccagttgtggaatgag
ctgtgtgagctgattgcagaaaatccaaacaaagtgacgtcactcaaaatcgagcctatc
attcgccagggattgaagcgttacacagatcagattgcagcactatggaattcgctggct
gactactatgtccgtggagctcacatggaaagggctcgtgacatctatgaagaagccata
caaacagtcatcacagtgcgagacttcactcaggtctttgacgcctatgcccagtttgaa
aagagcagcattgcctctaagatggaagccatggaagaaacaggagcaacagaagaagat
gatcttgaactggaattgagattagctcggcttgaatccttgatggatcgacgaccactg
ctccttaacagtgtgttgctacgacagaatccccacaacgtccatgagtggcacaagaga
gtgaagctgtttgaggggaaacctcaggagatcatcaacacgtacacagaagcagtacag
acagtggacccaaagcaggcgtcaggcaaacctcacacactgtgggtggagttcgccaaa
ttttatgaggatgccggtcagctggaggatgcgaggctgatcttcagcaaggcggtgcag
gtggactacaagcatgttgatgacctggcctctgtgtggtgtgagtgggccgagatggag
ctcaggcatgaaaacagcgaagaagccctgaagttgatgcagaaagcgacgactcctcca
ccacgaaaagtggcttaccatgatgagacggagacagtgcaggctcgtgttcacaagtcc
ctgaaggtgtggtccctgtacgctgacctggaggagagctttggcacatttaagtcatgc
aaagctgtgtatgatcgtatcttggatctgcgcattgccacaccacagatcatcatgaac
tacggcatgttcctggaggaaaacaactattttgaagaagccttcaaggcgtatgagaag
ggcattgctcttttcaaatggccaaacgtttttgacatctggaacacatacctcaccaaa
ttcatccaaagatatggaggcagcaagctggagagagccagagatttgtttgaacagtgc
ctggatggctgccctgacaagtttgccaaagcaattttcctgttgtatgccaagttggag
gaggagcatggtttggctcgacacgccatgagtgtgtatgacagggccaccaaggctgtt
ttgcctgaagaacaacatgaaatgtacaacatctacataaagagggcagcagagatctac
ggcatcacacatacacgttctatctacgagaaagccgtcgaggtgctgcacaacgaacag
gccagggagatgtgtgtgaggtttgcagacctggagcgaaagctgggtgagatcgaccgt
gcacgagcaatctacgctcacggctcacagatggcagaccccagggttgctggacagttc
tgggatgcttggaaagagtttgagatcaaccacggcaacgaggatacagtgcgtgaaatg
ctgcgcatcaaacgcagcgtgcaggccacttacaacacacaggtcaacttcatgtcagca
cagatgatagcagccagctccctgaagaaagaggaaatggcagcgggcggtgcggagtcc
agcatgcagcagctggaagccagggccagacagctggctgaggagtccatgcaggaaaag
gcagccgcagaaaagaagcttctttttgtcaggagtaccacaacagatgaagagctgggg
gagatgacgaagacacacaaccctgaagagatcgacattgatgatgacagcgatgaggac
gaagaagtggaagagatggagcttcatcagcagcctgtcccgtcccaggtgtttggggga
ctggcagaggaggcagaacgagatgatgactag
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