Littorina saxatilis: 138949397
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Entry
138949397 CDS
T10665
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lsax Littorina saxatilis
Pathway
lsax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138949397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsax03041
]
138949397
Enzymes [BR:
lsax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138949397
Spliceosome [BR:
lsax03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
138949397
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
PWI
GIPC1_GH2
Cas3-like_C_2
nSTAND_NTPase5
Flavi_DEAD
TsaE
Motif
Other DBs
NCBI-GeneID:
138949397
NCBI-ProteinID:
XP_070177311
LinkDB
All DBs
Position
LG15:complement(43501048..43529058)
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AA seq
1054 aa
AA seq
DB search
MALTERWVNDKLFDILGISDKYIAQYMIGLASKAESSEDFVEKLKATQTVEVDNNVVVFA
RELFQRVPHKRKAVREMTSDQREQIELEQKNQSYQLLDEDDSVDDDSDEFVQPLPPKKSK
TDRKMKRNLRRKKESSDSDSEPERETAAVQIEDSSEDELDKEEEERQKDLKERDEFAERL
KDKDKDKTRNTADKTSKSKAYEEAKRRLEMEAEDRKKAVPDIRKRSRRDYLAKRGQDKLD
DLDAEVQDEEFLFGGSSLTEKERRNMDYKRNVLKLAKEHKKAKEIERVDRYFLPEDDVKP
QEKYVEDAKEIGPNFEQRRWEDEHFHAGTLRFGARDAREKSKKAAKTYDVIMDDEIEFVQ
AIKMPGTMKDKDIMDKVSKKFASSRHETEDLSEAEQKRQAIEETQRSLPIFPFKGDLISA
IREHQVLIIEGETGSGKTTQIPQYLHHAGFTKDGQKVGCTQPRRVAAMSVAARVSEEMGW
KLGNQVGYSIRFEDCTSERTILKYMTDGMLLREFLGEPDLASYNVLIIDEAHERTLHTDV
LFGLVKDIARFRPDLKLLISSATLDAQKFSEFFDDAPIFRIPGRRFPVHIYYTKAPEADY
LDAAVVSVLQIHVSQPPGDVLVFLTGQEEIETANEMLLERTRKLGSKIRELIISPIYSTL
PSDLQAKIFEPTPPGARKVVLATNIAETSLTIDGIVYVIDPGFSKQKSYNARTGMESLVV
TPISKASSNQRAGRAGRVSAGKCFRLYTAWAYKNELEDNTVPEIQRTNLGNVVLLLKSLG
INDLINFDFMDPPPHETLVLALEQLYALGALNHQGELTKLGRRMAEFPCDPMMSKMILAS
ERYKCSKEIITIAAMLSVNNAIYYRPKDKIVHADTARQNFFRPGGDHLTLLNVFEQWAET
DFSTQWCFENFVQHRSMKRARDVRDQLEGLLERVEIPVVSSPGDTIAIRKAITAGYFYHT
ARLTKGGQYKTVKHQQTVMVHPNSSLFEEHPRWLVYYELVFTTKEFMRQTIEIENLWLLE
VAPHYYRAKDLEDGSGKKMPKMLGKAKEDLTRKY
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggcactaacagaaagatgggtaaatgacaaactgttcgatatactgggtatatcggac
aagtatatcgcccagtatatgatcggactagcgtcgaaagcggagagttctgaagatttt
gtggagaaactgaaagcaacgcagacggttgaggtagacaacaatgttgttgtctttgct
agggagctttttcagagggtcccccacaagaggaaggcagtcagagaaatgacatctgat
caaagggagcagattgaactggagcagaagaatcagagctatcagctgttggatgaagac
gatagtgttgatgatgacagcgatgaatttgtccagccattgccaccaaagaagagcaag
accgaccggaagatgaaaaggaacctgcgtcgcaaaaaggagagctctgacagtgattca
gaaccagaaagagaaacggcggcggtgcagatagaagactcgtcagaagatgagctggac
aaagaggaggaggagcggcagaaggacctcaaggaacgagacgagtttgccgagcgtctc
aaggacaaagacaaggacaagacgcgcaacacggccgacaagacttccaaatccaaggca
tatgaagaagccaagagaaggctggagatggaggcggaggacagaaagaaggcggtgccg
gacatacggaagcggtctcgtcgcgactacctggccaagcgaggtcaagataaactggac
gaccttgacgcggaggtccaggacgaggagtttctctttgggggatccagcctgacggag
aaagagcggcggaacatggattacaaacgcaacgtcttgaagctcgccaaagaacacaaa
aaggccaaggagatcgagcgagtcgaccgctactttcttcccgaagacgatgtcaaacct
caggaaaagtacgtcgaagatgctaaagaaataggacccaactttgagcagcgccggtgg
gaggacgagcatttccacgcaggtacgttacgcttcggcgcccgcgacgctcgcgaaaag
agcaagaaggcggccaagacgtatgatgtcatcatggacgacgagatcgagtttgttcag
gccattaagatgcccggcaccatgaaagacaaggatatcatggacaaggtaagcaagaag
ttcgcatcgtcacggcacgagacggaagacttaagcgaagcagaacagaagcgtcaggca
attgaagaaacgcagcgcagtcttccgattttcccgttcaagggtgacctgatctccgcc
ataagggaacatcaggtgctgatcatcgagggagagacagggtctgggaagacgacacag
atacctcagtatcttcaccacgctggattcacaaaagacgggcagaaggtgggatgcact
caaccacgacgtgtggccgccatgtccgtggctgctcgtgtgtcagaagagatgggctgg
aaacttggcaatcaggttggatacagcatcagatttgaggactgcacgtcagaaagaaca
atcctcaaatacatgacggacggaatgttgctgcgagaatttctgggtgaacccgacttg
gccagctacaatgtgctgatcattgatgaagctcacgagagaacactgcacacggacgtg
ctgtttggtctggtgaaggacatcgctcgctttcgccccgacctcaagttgctcatctcc
agtgcaactttggacgcacagaaattctctgagtttttcgatgatgctcccatattccgc
atccctgggcgtcgctttccagtgcatatttattacacgaaggcgccagaagcggactat
ctggacgcggcagtggtgtctgtgctgcagatccacgtctctcagcccccaggggacgtc
ctggtctttctcaccgggcaggaagagattgaaacagccaacgaaatgctgctggagcga
acgagaaagctgggatccaagatccgagagctgatcatctcgccgatctactccaccctg
ccctccgacctccaggccaagatctttgaacccacgccccctggggccagaaaggttgtc
ctggcaaccaacattgcagaaacatcgctgaccatcgacgggattgtgtacgtcattgac
ccgggattctccaagcagaaaagttacaacgctcgcaccggcatggagtctctggttgtc
actcccatctccaaggcatcgtccaatcagcgagcggggagggcggggcgagtgtcggcg
ggcaagtgtttccgactgtacacagcctgggcctacaagaacgagctggaggacaacacc
gtgcccgagatacagagaaccaacctgggaaacgtcgttctgctcttgaagtcgctgggc
atcaacgacctgatcaactttgacttcatggaccctcctccccacgagacgctggtgctg
gcgctggaacagctgtacgcgctgggcgcactcaaccaccagggggagctgaccaagctg
gggcgacgtatggccgagttcccctgcgaccccatgatgtccaagatgatcctcgcctcc
gaaaggtacaagtgctccaaagagatcatcaccatcgccgccatgctgtcggtcaacaac
gccatttactaccgacccaaagacaagatcgtgcacgcggacacggccaggcagaacttc
ttccgaccgggcggcgaccacttgaccttgctcaacgtcttcgagcagtgggctgagaca
gacttctccactcagtggtgtttcgagaactttgtgcaacaccggtccatgaagcgagcg
agagacgtacgcgaccagctggaggggctgctggagagagtggagatccccgtcgtgtcc
agtcctggtgatactatcgccatcagaaaggccatcacagcagggtacttctaccacacg
gcacggctgaccaaggggggtcagtacaagacggtcaagcaccagcagacggtcatggtg
caccccaactccagtctctttgaggaacatcctcgctggctcgtctactacgagctggtc
ttcaccaccaaggagttcatgagacagacgatcgagatagagaacctgtggctgctggaa
gtggcgccacactactaccgtgccaaggatctggaggatggctcggggaagaagatgccg
aagatgctcggcaaagccaaggaagacctgacacgcaaatactga
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integrated database retrieval system
