Littorina saxatilis: 138952933
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Entry
138952933 CDS
T10665
Name
(RefSeq) 5'-3' exoribonuclease 2-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
lsax Littorina saxatilis
Pathway
lsax03008
Ribosome biogenesis in eukaryotes
lsax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
138952933
09123 Folding, sorting and degradation
03018 RNA degradation
138952933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsax03021
]
138952933
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138952933
03009 Ribosome biogenesis [BR:
lsax03009
]
138952933
03016 Transfer RNA biogenesis [BR:
lsax03016
]
138952933
Transcription machinery [BR:
lsax03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138952933
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
138952933
Ribosome biogenesis [BR:
lsax03009
]
Eukaryotic type
Pre-60S particles
RNases
138952933
Transfer RNA biogenesis [BR:
lsax03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
138952933
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
138952933
NCBI-ProteinID:
XP_070180787
LinkDB
All DBs
Position
LG17:28486189..28569022
Genome browser
AA seq
994 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIVVHCVEEKGKEVDGVRIPVDTSQPNPNDVEFDNLYLDMNGIIH
PCCHPEDKPEPKNEDEMMVLIFQYIDRIFSVVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKESADKAKLMTEMREEMITKGCHLPPVKPSSERFDSNCITPGTPFMFRLANCLRYYIH
DRLNNDPGWQDIMVILSDANVPGEGEHKIMDYVRRQRAQPNHDPNTRHCLCGADADLIML
GLATHEVNFTIIREEFKPNQPRPCDMCGQMGHEMKNCEGLPKEMCGEHDELSKPIGNECE
FIFLRLNVLREYLEKELKMDGLPFEYDFERALDDWVFMCFFVGNDFLPHLPSLEIRENAI
DRLIKLYKNAVYKTGGYLTDSGVVALDRVQLVMSELGTVEDEIFKKRRDDEMNFRRRTKA
KKERERRQQNFRNQGGLLGAVPIGQGGAASSNLRAQAYQMRKQNMSTSNQANTNAATELK
QLMGGKKKDEDSDEEPADDVRLWEDGWKDRYYSQKFDVDSDDIKFRRTVANHYVRGLCWV
LRYYYQGCASWKWYFPYHYAPFASDFVNIGELPNDFEMNTKPFQPMEQLMSVFPAASKKH
LPPTWQTLMYDPESPIIDFYPINFKIDLNGKKYAWQGVALLPFVDETRLHQGLQSVYPDL
TEAERKRNILGSDKLFLSIKNQAYSFFEALYEGGGPQTKAEAAQIETTHTNGMGGIVWCD
SLRVETGGVVMSPLDALEDLTDNKTICIQYQDPTFEANHLFEAKTLPGAVFPGRVLKPED
FNQNNRNQGYRPQLGFQRGSGYRPRGSSDVTAALRMIRNTTGMQGQGFVMSSQSMQPSYV
PYGFGGGGGGGGGRGGQQYGGNQGGQQWGNSSNNNAWNSNMARQQDAYSTNLARQQNVYR
PIPGSSSNSGGYGGGGSQGGVGGYDGGRRGYGDRSYGGGGGRDGGRPPLRGGYGDARGGR
GGYQRREDNYQRADDRRSNQHSNRGGQQDRYRPY
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccagcctttttcagatggctaagtcggaaatacccgtctattgtggttcac
tgcgtcgaagaaaagggaaaggaggtggatggtgtgaggatacctgtagacaccagccag
cccaaccccaatgacgtcgagtttgataacctctacctggacatgaatggcatcattcac
ccttgctgccaccctgaggacaagcctgagcccaaaaacgaggatgagatgatggtcctg
atctttcagtacattgacagaattttctctgtcgtccgaccacgccgtcttctgtacatg
gctattgatggagtagctcctcgtgcaaaaatgaaccagcagcgatctcgtcgtttcaga
gcgtcaaaagaatcagctgacaaagccaagctgatgacagagatgcgggaggagatgatc
accaagggatgtcacctaccccctgtcaaaccatcatcagagaggtttgacagcaactgc
atcacgccgggtacccctttcatgttccgactggccaactgcctgcgttactacatccac
gatcgtctgaacaacgaccctggctggcaagacatcatggtcattctgtccgacgcaaac
gtgcccggtgaaggagagcataagatcatggactacgttagaagacaaagagcacaacca
aaccatgacccaaacaccaggcactgtctttgcggtgctgatgctgatctgattatgctg
ggtctggccacacatgaggtgaacttcacaatcatcagagaagagttcaaacccaaccag
cccagaccctgtgacatgtgtggacagatgggtcatgagatgaagaactgtgagggactg
cctaaagaaatgtgtggcgagcatgatgagctgtcaaagcccattggaaatgagtgtgaa
ttcattttccttcgtctgaacgttctgagggagtaccttgagaaagaactgaagatggat
ggtctcccgtttgaatacgattttgagagagctctggatgactgggttttcatgtgtttc
tttgttggaaatgactttcttcctcacttgccatcactggaaatcagggagaatgccatt
gacagattgatcaagctgtacaaaaatgctgtctacaaaactgggggttatttgacagac
agtggagttgtggcccttgatcgtgttcagctggtcatgtcagaacttggcacggttgag
gatgaaatcttcaagaaacgcagagatgatgaaatgaatttcaggaggcgcaccaaagcc
aagaaagaacgcgagagaaggcaacaaaacttcaggaaccaagggggtctgctgggagca
gtgcccattggccaggggggagcagcctccagcaacttgcgtgcccaggcctaccaaatg
cgcaagcagaacatgtccacctccaaccaggccaacactaacgctgccacagagctcaaa
cagttgatgggagggaaaaagaaagacgaagattctgacgaggagcctgcagatgacgtt
aggttgtgggaagatgggtggaaggatcgctactactcacagaagtttgatgttgacagt
gatgacatcaaattcagacgcacagtggccaaccactatgtgcgaggactgtgctgggtg
ctgcgctactactatcagggttgtgcttcctggaagtggtatttcccttaccactacgcc
cccttcgcctcagactttgtcaacatcggtgaactgccaaacgactttgagatgaacaca
aaacctttccagcccatggaacagctgatgagcgttttcccagcagccagtaagaaacac
ctgcctcccacctggcagacgctcatgtatgatccagagtcgcccatcattgacttctac
cccatcaacttcaagattgatctgaacggcaagaagtacgcctggcagggtgtggctctg
ctgccctttgttgatgagacacgtctgcaccaaggcctccagtctgtctaccctgatctc
acagaggcagagagaaaacgcaacattctgggctccgacaagctgttcctcagcatcaag
aaccaagcgtacagtttctttgaagcactgtacgaaggcggaggcccacagaccaaagca
gaggccgctcagatagaaaccacacacacaaatggcatgggtggcatcgtgtggtgtgac
tcactgcgtgtggagacagggggagttgtgatgtcgcctcttgatgccttggaggatctg
actgataacaaaaccatttgcatacagtaccaagacccaactttcgaagcaaaccatttg
ttcgaagccaagaccttgcctggggcagtatttccaggccgagtgttgaagccagaggac
ttcaaccagaacaatcggaaccaagggtaccgccctcagttgggattccaacgtggcagt
ggataccgtccccggggatcctcagatgtgacagctgctctccgcatgatcagaaacaca
acaggtatgcagggccaagggtttgtcatgtcgtcacagagcatgcagccgtcctacgtt
ccctatggttttggtggtggcggcggaggaggaggcgggcgcggcggacagcaatatggc
ggcaaccaggggggacaacaatggggcaactccagcaacaacaacgcgtggaacagcaac
atggcgcgccaacaggacgcctactccaccaacctagctcgtcagcagaacgtctaccgt
cccattcccggctcatcctccaactccggaggctacggcggcggtggtagtcaaggtggt
gttggaggttatgatggaggtcgcagaggctacggcgaccggtcctacgggggcggcggc
ggccgtgacggggggaggccccccttgcgcgggggatatggagacgcccgtgggggtaga
ggaggataccagagaagggaggacaactaccagcgggccgacgaccgccgctccaaccag
cactccaacaggggaggtcagcaagatcgctaccgtccctactag
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integrated database retrieval system
