Littorina saxatilis: 138953105
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Entry
138953105 CDS
T10665
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
lsax Littorina saxatilis
Pathway
lsax04137
Mitophagy - animal
lsax04140
Autophagy - animal
lsax04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
138953105
04137 Mitophagy - animal
138953105
04148 Efferocytosis
138953105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsax03000
]
138953105
Transcription factors [BR:
lsax03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
138953105
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_11
PAS_3
PAS
bHLH_HIF1A
PAS_9
PAS_4
HIF-1a_CTAD
PAS_8
HIF-1
HLH
Diguanyl_cycl_sensor
Motif
Other DBs
NCBI-GeneID:
138953105
NCBI-ProteinID:
XP_070180989
LinkDB
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Position
LG17:complement(24675718..24754478)
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AA seq
752 aa
AA seq
DB search
MDRGKLPLEDLTATTPPPLLGFPRAASHGHSRNNEVRKLKSKYAARSRRDKETNWFTELA
KHLPLPASVSSQLDKASVMRLTISFFKICNVLEQHDWSEFAGGKTKFGRYDQEAPKALDG
FMFILSGDGDIVYVNEKVVKYLGIQQMELMGQSIFEFAHPRDEDEIREALSTRPQRHKAP
VTEEHVFFLRLKCTLTSKGRNVNLKSANYKVIKCTGRLVMKSGRRQLGGSSLFSPYLLAM
GEPIPHPANIEIPLDNNTFLSKHDMNMRFTYCDDRVSELLNYSSDELLGKSLYDYHHALD
SGVVEKAYKDLLGKGKGQTMTGQYRFLARGGGMAWVVTQATVIYNNRNQKAQWIVCVHYV
LSHIEQKDLILSDVQLPIPKCLPAGLQLSTESIISRKTDDMEKGYFIPPEIRNSINMVNN
EPEDLSYLAPRAGDACIPLSFPPFEQVGMASREDERTLSSPPALLVVGGLKKEPGMLPAV
CRTRDMASLSVPSPASNNSTASSSRMSSPRDYVHETTPELMMTMDKFFQAMDTKADTSKD
EMEAIDFDSRAPYIPMNGDEDLCLLGPTRDSMMTLQNEVDPGLYGKTEHVFKPKTEDLFE
EPAQPPKPSIRDMIGGSTAVASIERPPDTMFQQIKRPLDMNSLEKGPPAHKIQRVRHRQL
HTVPTLMESKESVLRNLLLKGEDPNGYRVMSPMAPDMAFNKRISNNNFRTPLQLLTQRDC
EVNAPTTHDGEGLLQGQDLLKALELDILRTPR
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtggtaagctgccattggaggatctgactgctacgacaccacctcctcttctt
gggtttccacgggcagcgtcacatggacattcgaggaataacgaagtgcgcaaactgaag
tctaagtatgccgcgcgcagccgtcgcgacaaggagaccaactggttcaccgaactggcc
aagcacctgccccttccggcctccgtctcctcccagctggacaaggcctccgtcatgagg
ctgaccatcagcttcttcaagatctgcaacgtactggagcaacacgactggtctgagttt
gcgggaggaaagactaagtttggcagatatgaccaggaagcccccaaagctctggatggg
tttatgttcatactatcaggggatggtgacatcgtctatgtcaatgaaaaggtggtcaag
tacctgggcattcaacagatggaattgatgggtcagagcatctttgagttcgcccaccct
cgtgatgaggatgaaattcgtgaggccctgtccactcggccacagagacacaaggctcct
gtcacagaagaacatgttttcttcctacgcttgaagtgtactctgacatccaaaggaagg
aacgtcaacctgaaatcagccaactacaaggtgatcaagtgcacaggtcgcctggtgatg
aagtctgggaggagacagttggggggtagctccctcttcagcccttacctgctggccatg
ggggagcccatcccccaccccgccaacattgagatccccctggacaacaacacctttctc
agcaagcatgacatgaacatgcgcttcacttactgtgacgacagagtgagtgagctgctg
aactacagcagcgatgaactgttgggcaagtccctgtacgactaccatcatgccctggac
agcggtgtggtggagaaggcctacaaggacttgctcggcaagggcaaaggtcagacgatg
actggccagtaccgtttcctggctcgtggcggtggaatggcgtgggtggtcacccaggca
acggtcatctacaacaaccgcaaccaaaaggctcagtggattgtctgtgttcactatgtg
ctcagccacattgagcagaaggatctgatcctgtcagacgtacagctgcccatccccaag
tgtctgccggctggtcttcagctcagcaccgagtccatcatctctcgcaagaccgacgac
atggagaagggatacttcatcccgcctgaaatccgtaactccatcaacatggtcaacaac
gagccagaagatctgtcctacctggcccccagagctggagatgcgtgcatcccactcagc
ttccctcccttcgaacaagtgggcatggctagcagagaggatgagcgcactttgtcttct
cccccggccctgctggtagtgggcgggctgaagaaggaaccaggcatgctaccagcagtg
tgtcgtacaagagacatggcgtccctgagcgtcccgtctcctgcctccaacaactccacg
gcctcatcctccaggatgagcagcccccgggactatgtgcacgagacaaccccagagctg
atgatgaccatggacaagttcttccaggccatggacaccaaggctgacaccagcaaggat
gaaatggaggctattgactttgactcacgtgcaccatacatcccaatgaatggagatgaa
gatctgtgtctgctgggtcccacccgtgacagcatgatgaccctgcagaatgaagtcgat
ccaggactttacggcaagacagagcacgtcttcaaacccaagacagaggacttgtttgag
gagcccgctcagccacccaagcccagcatccgggacatgataggtggcagcactgctgtg
gcaagcatcgagcggccaccagacaccatgttccagcagataaaacggcccctggacatg
aatagtttagagaaaggccctcctgcccacaagattcaacgtgtgagacacaggcagcta
cacacagtcccaacactgatggagagcaaagaaagcgttctccgcaacttacttctcaag
ggggaggatcccaacgggtacagagtcatgtcaccaatggcaccggacatggcattcaac
aagagaatttccaataacaattttcggacaccactgcagcttctgactcagcgagactgc
gaggtgaacgcccccacaacgcacgacggtgagggtcttctgcagggtcaggacctactc
aaggcactggagctggacattctcagaacccctcgctaa
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