Littorina saxatilis: 138959175
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Entry
138959175 CDS
T10665
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
lsax Littorina saxatilis
Pathway
lsax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138959175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsax03021
]
138959175
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138959175
Transcription machinery [BR:
lsax03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
138959175
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
138959175
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCHC
zf-CCCH_12
zf-CCCH_RBM22
zf-CCHC_4
zf-CCCH_4
zf-CCHC_3
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
138959175
NCBI-ProteinID:
XP_070186654
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All DBs
Position
LG2:51717420..51726972
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AA seq
283 aa
AA seq
DB search
MQEIIAPVTSIRFDIEIAIEQQYGSLPLPFPGMDKSGAAICTYYLTSICNKGAACPYRHV
KGDRSVVCKHWLRGLCKKGDDCEFLHEYDMSKMPECFFFSKFGQCSNKDCPFLHIDPENK
IKDCPWYDRGFCRHGPNCKNRHVRRVICQCYLNGFCLDGPNCKYVHPSFDIPAPDPQQQA
KKLAIVCHTCGQAGHKALYCPLNPNQPPQSMSGDGDGTERHMMRRPLEQVTCYKCGEKGH
YANKCPKGHLAFLSPSAADVQPHQNNWHTQQRGGSMISSIVTQ
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagattattgcaccagtgacaagcattagatttgacatcgaaattgctattgaa
cagcaatatggatcactcccacttccatttcctgggatggacaagtcaggagcagccatt
tgcacatactacctcacgtcaatttgcaacaaaggagctgcctgtccataccgtcatgtc
aagggagatcgctcagttgtgtgcaaacactggctacgggggctttgcaagaagggagat
gactgcgagtttcttcacgaatatgacatgtccaaaatgcctgaatgttttttcttctca
aaatttggtcagtgtagcaacaaagactgcccatttctacacattgacccagagaataaa
atcaaagactgtccttggtatgacagaggcttttgccgacatgggcccaactgcaaaaac
cgacatgtgcgacgcgttatctgccagtgctacttgaacggtttctgtcttgatggtccc
aattgcaaatacgtccatcccagctttgacatcccggcccctgacccccagcagcaggcc
aagaaactggctattgtgtgtcacacgtgtggacaggcaggccacaaggccctctactgt
cctctcaaccccaaccaacctccacagtcaatgtcgggggatggagatggaacagaaaga
catatgatgcgccgccctctggagcaggttacttgctacaagtgtggggagaagggccac
tacgccaacaagtgccccaagggacacctggctttcctcagccccagtgcggcagatgtc
cagccccaccagaacaactggcacacccagcagcgtggaggctccatgatcagtagtatt
gtcacacagtga
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