Littorina saxatilis: 138959616
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Entry
138959616 CDS
T10665
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lsax Littorina saxatilis
Pathway
lsax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138959616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138959616
Enzymes [BR:
lsax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
138959616
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
138959616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
Peroxin-22
Motif
Other DBs
NCBI-GeneID:
138959616
NCBI-ProteinID:
XP_070187275
LinkDB
All DBs
Position
LG2:complement(69995664..70030723)
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AA seq
628 aa
AA seq
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MEITRSNLTEKLEEIAEAIDQATFLAVDGEFTGLDKPDCSHSAPFDTAKERYFKLKEGSL
EFLMIQFGVCAFKFKEDTQSYEARPFNFYVFPRPYTRQAPDKRFLCQSSSIDFLVQQGFD
FNKLFREGIPFLMPTEEDVMRESLAGKHQAFSKFSSPAFVSPDGADMGPGKGPVQIPDEQ
KDFIAGVCNKISSFIETSESEVLQLAPCNGFQRKLIYQTIRTKFSAVHLETKTGEKKDRF
IVVTKVASEDDLKKKEKDKQNAEIMELEEAVGFSKVMKLISKSGKLVIGHNMILDVMHML
NDFLCPLPADLEEFKSMVKCCLPRLIDTKFMASTHPLRDVIPNTALGNLQETLEKGPFTP
AKVELMEGFSDYQNATDKYHEAGYDAYVTGCMFATMTNYIGNYKKPDPKPAVAPTEAVLK
PFMNKLFLMRIADIPYLNLGGPDLEPNRDHVFHLSFPREWKSADINNLFAPYGSIHISWL
NDSSAFVSLFKKDNAAVVLKTLAMTQSQYQLVPYNVYKSKAGVASSLMPPPVPEKASSFV
PVSTPTPLLTGLKRSAADPAADDDDSDSNESASKKQRSANKDAAPLAAMEEDEIPELVPR
SEGDSDKSSNGRGVTNTPQKMFAEPEVW
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggagatcacaaggagcaatcttacagagaagctggaagaaattgcggaagcaattgac
caggcaactttcttagcagtggatggagaatttactggattggacaaacctgactgtagt
cattcagcacctttcgacacagccaaagaaagatacttcaagctcaaagagggttcactg
gagtttcttatgatccagtttggtgtctgtgctttcaagttcaaagaagacacacagagc
tatgaagcaaggccattcaacttctatgtcttccccaggccttacaccagacaggcaccc
gacaaacgcttcttatgtcagagttcgagcattgatttcttggtgcaacagggatttgat
ttcaacaaactatttcgtgaaggaatccccttcctgatgccgacagaagaagatgtgatg
cgagagtcgttggctggtaagcaccaggccttctccaaattctcctctccagcttttgtc
agcccagatggggccgacatgggcccaggcaaggggcccgttcagatccctgatgaacag
aaagacttcatagctggtgtctgtaataaaataagcagtttcattgagacatctgagtca
gaggtgcttcagcttgccccttgcaacggctttcagaggaagctcatctatcagacaata
cgcacaaagttctcggcagtacacctggagaccaagacaggtgagaagaaggatcgcttc
atcgttgtgaccaaggtggccagcgaggatgatctcaagaagaaggaaaaagacaaacag
aacgctgaaatcatggaactggaggaagcagttggtttttcaaaagtgatgaagctcatt
tcaaaatcgggcaagctagtgattggccacaacatgattcttgatgtgatgcacatgctg
aacgacttcctttgccctttgcctgcggatcttgaggaattcaaatcaatggtcaagtgt
tgtttacccaggttgatagacacgaagttcatggcaagcacacatccactgagggacgtt
atacccaacacagctcttgggaatttgcaagaaactttagagaaaggtccattcacacct
gcaaaagtggagttgatggaagggttcagtgactatcagaacgctacagacaagtatcat
gaagctggttacgatgcctacgtcacagggtgcatgtttgccaccatgacaaactacata
ggtaattacaagaagccagatcccaaaccggcagtagcgccaacagaagcagtgctcaaa
ccattcatgaacaagttgttcttgatgaggatagctgacattccatacctgaatctgggc
ggaccagacctggaacccaacagggatcatgtgtttcacctgtcgtttcccagggagtgg
aaatctgcagacatcaacaacttgtttgctccttatggcagcattcacatttcctggctg
aatgactcctctgctttcgtgtcgctgttcaagaaagacaatgcagctgttgtgttaaaa
actctggcaatgacacagtctcagtaccagctggttccgtacaacgtctacaaaagcaag
gctggagtagcatcatctttaatgccaccaccagtgccagaaaaagcgtcgtcctttgtt
cctgtctccacaccaacaccactcctcactggcctcaagagatctgctgccgaccctgct
gctgatgatgatgattctgactctaatgagtcggctagcaagaaacagcgctctgctaat
aaagatgctgcaccattagccgccatggaagaagatgagattccagagttagttccaagg
tcagaaggtgacagtgacaaatcttcaaacggaagaggtgttaccaatactccacagaag
atgtttgcagaacctgaagtctggtga
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