Littorina saxatilis: 138960009
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Entry
138960009 CDS
T10665
Name
(RefSeq) uncharacterized protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
lsax Littorina saxatilis
Pathway
lsax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138960009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138960009
Enzymes [BR:
lsax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
138960009
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138960009
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
138960009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
138960009
NCBI-ProteinID:
XP_070187828
LinkDB
All DBs
Position
LG2:complement(86430383..86505340)
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AA seq
956 aa
AA seq
DB search
MGKEDEAGRPVKREVVSASANLEVISEENFARRLQGMSACINCQKERYYGNTHSRNAGPR
HQHNNNHHNSNSSNHNNNNNNSNKQGRRSKQGRRKQAKANTPIVIHLKDTLRSALQQRQR
SFDTDSDVSVRSTDDDLGQDTFGDVSSIPEFIPQYLHQPQAYPHPHHHTGLAQPAVSSLS
QRREKSKKNLTALISVIEKAHHKDSCHIESNLVGQNSNRSKFSHLLNNAVAFVEKGQAQQ
HRSIVECDNVDVICNDLHKNEKGGGEVTVEDTDSNSDKSSVASSSEVFSDSDSQMVEETA
GFEFTSEELQRLAEYTTGYPIYRYDCAPSDCPECLSSWYSHQIYQYEGCTMDTAATHQSY
SRLPRGRNRSSSHNESEHDTTLEGSDNEGETEGAEASAEYASRRGAEGRRHTSSTSSSHS
YGQAKSTPSSPTGTSRDAVWPWRKAGRQLWDIDISQASRRSPGQDRHDNTFPNSVYLDLT
GSDVSISIYYHHSLLQDDGVRNAIAASMMTPSVYATTTTSSLYSIYYSSYVASPVYGLSL
PLSFFNDNALPKIAMVPPHELKKFSSSAPPARQWIVTQQADRSRPAATFTVMCYNVLCDK
YCTRQQYGYCPTWALNWEYRKKGIIEDIRNLAADIISLQEVETDQFYHFFLPSLRQDGYD
GIFSPKSRARTMTEQERKHVDGCAIFYKKEKFRLVEEKLVEFNQVAMANADGSDDMLNRV
MTKDNIGLCALLETKPPIFDHGLSLPDPLTRQLILVATAHIHWDPEFSDVKMVQTMMLMW
ELQKLMEEATHKYHLPYPGPLNCNSIPFVFCGDLNSLPDSGVIEFLTNGKVAVNHMDFKD
NLYEKAMKKMSNGDKTHIYHNFKLDRAYIDVMPVTNYTYDFKGIIDYIFFSQKRLRVLGQ
LGPYEEDWFRHNKVLGCPHPHIPSDHFSLMVELEMAIQPPPPMSRGPPPPMGNKPR
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaggaggacgaggccgggcgaccggtcaagcgcgaggtggtcagtgccagcgcc
aacctggaggtgatcagcgaggagaactttgcccgccgtctgcagggcatgagtgcctgc
atcaactgccagaaggagcgttactatggcaacacccacagcaggaacgcgggtccacgg
caccagcacaacaataaccatcacaatagcaacagcagcaaccacaacaacaacaacaac
aacagcaacaaacagggacggcgtagtaaacagggtcgtcgcaaacaggccaaagccaac
acgcccatcgtgatacacctgaaggacactctgcgctcggccttacagcagcgacagcgc
agcttcgacacggactctgacgtgtcggtgaggtccactgacgatgacctgggccaggac
acgttcggggatgtatccagcatccctgagttcatcccccagtacctgcaccagccccaa
gcctacccccacccccaccaccacacaggccttgctcagcccgccgtctcctccctgtct
cagcgacgtgaaaaatccaagaagaacttgaccgccctcatctcggtcatcgagaaggct
caccacaaggactcgtgccacatcgagtccaacctggtgggccagaactccaaccgctca
aagttctcccacttgctcaacaacgccgtggccttcgtcgagaaagggcaagctcagcag
caccgcagcatcgtggagtgtgacaatgtggacgtcatctgcaacgacctgcacaagaac
gagaagggcgggggggaggtcacggtggaggacacggactccaactcggacaagtcctcc
gtggcctccagcagtgaggtgttctcagactcagacagccagatggtggaggagaccgcg
ggcttcgagttcacctctgaagagctgcagaggctggcggagtacaccacgggctacccc
atctaccgctacgactgtgctccctcggattgccccgagtgcctgtcgtcgtggtactcg
caccagatctaccagtatgaaggctgcaccatggacacggcagccactcaccagtcctac
agcaggctgccaaggggacgaaacagaagcagcagccacaacgaatccgagcacgacacc
actctggaagggtcagacaacgaaggggaaacggagggcgccgaggcatcagcagagtac
gcatccagaagaggagcggaaggcagaagacacaccagcagcacctcgtccagccacagc
tacggacaagcaaaatccaccccgtcctcgccgacggggaccagcagggacgccgtgtgg
ccgtggcggaaggctggacgccagctgtgggacattgacatctcgcaggccagtcgccgc
agcccgggtcaagatcgccacgacaacaccttccccaacagcgtgtacctggacctgacg
ggaagtgacgtgtccatctccatctactaccaccacagcctcctgcaggacgacggggtc
cgcaacgccatcgccgcctccatgatgacccccagcgtgtacgccacgacgaccacctcc
tccctctactccatctactactcgtcctacgtggcctccccggtctatggcctgtccctc
cccctctccttcttcaacgacaacgccctgcccaagatcgccatggtgccaccccacgag
ttgaaaaagttctccagttccgcgcccccagcaagacagtggatagtcacacagcaagca
gaccgatctcgaccagcagccacgttcacggtgatgtgctacaacgtgctgtgcgacaag
tactgcacgcgccaacagtacggctactgccccacctgggcccttaactgggaataccgc
aagaaaggcatcattgaggacatcaggaacctcgctgctgacatcataagtctacaggag
gtggaaactgaccaattttaccactttttcttgccgtccttgagacaagatggctacgac
ggcatcttctcgcccaagtcacgtgcgcgcaccatgacggaacaggaacgcaagcatgtt
gacggatgtgccatcttctacaagaaagaaaagtttcggttggttgaggagaagctggtt
gagttcaaccaggtggcgatggccaacgcggacggcagcgacgacatgctcaaccgtgtg
atgacgaaggacaacatcggcctctgtgccctgctggagaccaaaccacccatctttgat
cacggcctgagcttgccggaccccttgacgcgacagctgatcctggtggccacggctcac
atccactgggaccccgagttcagcgacgtcaagatggtgcagaccatgatgctcatgtgg
gagctgcagaagttaatggaggaggccacgcacaagtaccacctgccctaccccggcccc
ctcaactgtaactccatccccttcgtcttctgtggagatctcaactctctgcccgactcc
ggcgtgatcgagttcctgacgaacggcaaggtggcggtgaaccacatggacttcaaggac
aacctgtacgagaaggccatgaagaagatgtccaacggagacaagacccacatctaccac
aacttcaagctggaccgcgcctacatcgacgtcatgcccgtcaccaactacacgtatgac
ttcaaaggcatcatcgactacatcttcttctcccagaagcggctgcgtgtgctgggccag
ctggggccctacgaggaggactggttccgccacaataaggtgctgggctgcccccacccc
cacatcccctccgaccacttctccctcatggtggaactggagatggccatccagcccccg
ccccccatgagccgcggacccccaccccccatgggcaacaagcccagatag
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