Littorina saxatilis: 138962355
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Entry
138962355 CDS
T10665
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lsax Littorina saxatilis
Pathway
lsax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138962355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138962355
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138962355
mRNA degradation factors
5'-3' decay
Decapping complex
138962355
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
138962355
NCBI-ProteinID:
XP_070190243
LinkDB
All DBs
Position
LG3:40404616..40450279
Genome browser
AA seq
887 aa
AA seq
DB search
MENAIHVMSSSGMPALGLGAGIPGSHDNELIEAPEEEEEFDVLNDETFGNCEGDWDEEEH
KRFAELEGESFFDLQPPDHTKDSGYGNAERSYRSQEEFLEQSISRLMEEEEDDKAKFFGK
GQPIPFSGRQQQHGQVHLDQLFGPSSPPALLDTEHLDLLQVSPKSRNIWGTPSHDSQFRK
PADALRKLFDTAKAGQRGAPSPAPQVYHPPMPTQSPVGLPQAHTLEEIERQMMSRSRTPQ
VITAEELERQMRGEDSPRGEYSRTPQVVNHHPQIGPPPQLPPGLLPASALTGEMPRSPFP
PGMPPMPLPHHMAMHPPMTPPPGKPPTGMSPINQHPMANGRSSPINIKGLPPGQNLSSPM
GRSSSTPTPPLVRGMPPHFQSPHPARLVSPYSIGNSPMAVNLASRMMTPPPNMPPHGHIP
HGPIPHMPPMPNSPMGTPPHTRIPPPSNMQDMSPHSRSQQQHHHVVDRRQEIYSQHGNGE
ASDKHRAYRTNYQRPPPWQKNQPQRRQHQHPQQGEEVEDEYAGLMTQREKDWIIKIQLLQ
LNTDNPYLDDYYYTYYTLRKKQEESGHTDSMARFLIPNFAKIESRAYTPAQFEGSLGRLT
TASVHNPRHIIDVSGGSSPSEDSSKKNVSKELRKFRQLLMDIEKGYILLLDVDDIEKKVF
AVPEDSRLSLFLERHEKICMLYQYFTSDESIEQYMQILSVRKGRKLLARVLPLFTKNQAH
VALCILFHHMQALVRKDAAEGGLVSLTRPVCRAMEGSDLESLVRLVNILEGEKPPQTGSY
LQTLLKNQFSAAVLCGLLNQAEQVFKDTSPVDMDNQLQTEWSQFVEEFAEGLEKMALKDL
PVATFLLPLTEAHLSRHLNAQLVGKVEEKVHRLTTPLQTTASSNAAS
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgcaatccatgtcatgtctagttctggcatgcctgctctgggacttggagca
ggaataccaggcagtcatgacaacgagttgatagaagctccagaagaagaagaggagttt
gatgttctcaacgatgaaacatttggaaattgtgaaggagattgggatgaggaggaacac
aagcgctttgcggagttggaaggggaatccttctttgacttgcagcctccagaccacacc
aaggactctggatatggcaatgccgagcggtcctatcgcagtcaagaggagttcttggaa
cagagcatcagccggctgatggaggaagaggaggatgacaaagcaaaattcttcggcaaa
gggcagcccattcctttctctggcaggcaacaacagcatggacaggttcacctggaccaa
ctgtttggcccctcctccccacccgccctcctggataccgaacacctggatttgttacag
gtatccccgaaaagcaggaacatttggggtactccatctcacgacagccagttccgcaaa
cctgctgatgccctccgcaaactctttgacactgccaaagctggacagcggggtgcaccc
tcccctgcccctcaggtctatcaccctcctatgcccacacagtctccagtgggcttgcca
caggcccacacgctagaggagattgagcgtcagatgatgtcacgcagccgcacaccccag
gtgataacagcagaggagttggaacgacagatgaggggagaggacagtccgcgtggagag
tacagtcgcacaccccaggttgtgaaccaccatcctcagatcggcccccctccccagctc
ccccctggcctcctcccagcctctgccttgacaggggagatgccccgctccccattccct
ccaggaatgcctcccatgcccctgcctcaccacatggctatgcatccacctatgactcct
ccgcctggcaagcctccaacaggtatgagtcccatcaaccagcaccccatggccaacggc
cgcagctcccccatcaacatcaaggggctgccgccaggccagaacctgagttctccgatg
gggcgtagtagcagcacccccacccctcccctggtgcgagggatgcctccccacttccag
tccccccatcctgccaggcttgtgtctccctatagtattggaaacagccccatggcggtt
aacttagccagccggatgatgactccacctcccaatatgcctcctcatggacacatacct
catggacccatacctcatatgcctcccatgcctaacagtcctatgggcacaccgcctcat
acccggataccacctccttcaaacatgcaggacatgtcaccccattctcgcagccagcag
cagcaccaccatgtggtggataggagacaggagatctatagccagcatggtaacggggaa
gcaagcgacaagcacagagcgtaccgcaccaactaccagcgaccgccaccctggcagaag
aaccaaccccagcgacgtcagcaccaacatccccagcagggggaggaggtggaggatgag
tacgctggcctcatgacacagagggagaaggactggatcatcaagattcagcttctacag
ctcaacaccgacaacccctacctggatgactactattacacttactacacgctgcgcaag
aagcaagaggagagtggacacacggactccatggctcgcttcctcatcccaaattttgcc
aagatcgagagcagagcgtacacaccagcccagtttgaggggtcattgggtcgtctgacg
acagccagtgtccacaaccctcgccacatcattgacgtctccggcgggtcttcgccttca
gaggactcctccaagaagaatgtcagcaaggaactccgcaagttccgacagcttctgatg
gacattgagaagggttacatcttactgttggatgtggacgacattgagaaaaaggtcttc
gctgtccctgaagatagcaggttgtcattgttcttggaacgccatgaaaagatctgcatg
ttgtatcagtactttacgagtgacgagagcattgagcagtacatgcagatcctcagcgtc
agaaaaggcagaaaacttcttgcaagagttttgccccttttcaccaagaaccaagctcat
gtggcgctatgcatcctgtttcatcacatgcaggctctcgtccgcaaagacgctgctgaa
ggaggcttggtgtcgctgaccaggccggtgtgtagggccatggagggcagtgacctggag
tccctggtgcgtctggtcaacattctggagggggagaaacctccacagactgggtcctac
ctgcaaacactcttgaagaaccagttcagcgcagctgtcctgtgtggtctgctcaaccaa
gcagaacaagttttcaaggatacctcgcctgtagatatggataaccagcttcaaacagag
tggagccagtttgtggaggaatttgctgaaggactggagaaaatggccttgaaagaccta
cctgtcgccaccttcctcctccctctcacggaggcccacctgtcacgccacctgaacgcg
cagttagtggggaaagttgaagagaaggtacaccgattgacgacaccactgcaaactact
gcctcttccaacgctgcttcttga
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