Littorina saxatilis: 138962357
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Entry
138962357 CDS
T10665
Name
(RefSeq) cleavage stimulation factor subunit 3-like
KO
K14408
cleavage stimulation factor subunit 3
Organism
lsax Littorina saxatilis
Pathway
lsax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138962357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138962357
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
138962357
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
NRDE-2
TPR_16
TPR_6
TPR_19
CTD12
Cullin_binding
Motif
Other DBs
NCBI-GeneID:
138962357
NCBI-ProteinID:
XP_070190250
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Position
LG3:39329080..39388641
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AA seq
716 aa
AA seq
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MAQNEETGYIADKIVKAEKRIKAYPYDTEAWSVLIRDAQMRKIEDARALFERLVEQFPNA
GKYWKLYIEQELKAKNYERVEKLFQRCLIKVLNIDLWKLYLNYIKETKGKLASYREKMAQ
AYDFALEKIGMDIMSYQIWVDYINFLKSVEAVGSYAENQRISAVRKVYQRGVTNPMIHIE
ILWKEYCAYENSINALIAKKMTEDRGRDYMNARRVAKEYEAVTRGLDKSAPSVPPQNSFQ
ESKQVDLWKKYINWEKNNPLRTEDHSLITKRVMFAYEQGLLCLGHHPDIWYEAASYLEQS
SKLLTEKGDQNAGKLFADEAAAIYERSTTSLMKSNMLLYFAYADFEETRMKYEKVHEIYK
RLVEREDVDPTLPFIQYMKFSRRAEGIKTARLVFKQAREDKRSKYHVFVSAALMEYYCSK
EKSIALKIFELGLKRFSDCPDYALNYIEFMSHLNEDNNTRVLFERVLSSGSITPEKSMDI
WSRFLAFESQVGDLASIVKVEKRRAQTIEKVQEFEGKETALLIDRYKYLDLMPCSDSELR
AIGYLALIKQNVVQLPASLGASAALHTTDMKVLPQFAKRPRFPKPDIEQMLPFKPRALVP
PGSHPVPGGVFPPPPAAANLLQILPPPQSFSGPHIVIDKFMEHMANLQLPSGPIGVPNGT
DGQFRMDPGTQYSIDLLSGNRKRRHTENEESDEEGENSISAPANDIYRARQQKKVK
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaaacgaggaaacggggtacattgctgacaagattgtgaaggcagagaaacgg
atcaaggcctatccctatgacaccgaagcatggagtgttctcatccgagatgcgcagatg
cgaaagattgaagatgcccgtgcattatttgagcgcctcgtggagcagtttccaaatgct
gggaaatactggaaactctatattgagcaagagctgaaagcgaaaaactacgaacgagtg
gaaaagctctttcagcgttgcttgatcaaggttctcaacatagacctgtggaagctgtac
ctcaactacatcaaagagacaaaaggaaaactggcgtcatacagagagaaaatggcacag
gcctatgactttgctctggagaaaattggtatggacattatgtcctaccagatctgggtg
gattatatcaacttcttgaaatctgttgaggcagttggttcatatgctgaaaaccaaagg
atatcagcagtgcgcaaagtataccaacggggtgtgaccaatccaatgatccacatcgaa
atcctttggaaggagtattgcgcctatgaaaacagcatcaatgccttgatcgccaagaag
atgacagaagacaggggcagagactacatgaatgcccgacgtgtggccaaggaatacgag
gcagtcactagaggtctggacaaaagtgccccctccgtcccaccacagaactcttttcag
gaatcaaaacaagttgatctgtggaagaaatacatcaattgggagaagaacaatcctctg
agaactgaggatcattcgctcattaccaaaagagtgatgtttgcctacgagcagggtctg
ttgtgcctgggacatcatccagacatctggtatgaggcagcctcctacctcgaacagtcc
agcaaactactcacagaaaagggagaccagaacgccggcaaactcttcgctgatgaagct
gcagccatctacgagagatcaaccaccagcctcatgaagtcaaacatgctgctctacttt
gcctatgctgactttgaggagacaagaatgaaatatgagaaagtccatgagatctacaaa
cgtctggtagaaagggaggacgttgatcctacactgccattcatacagtacatgaaattt
tcgcgtcgagcggaaggcattaaaacagctcgtttggtgttcaagcaagccagggaagac
aaacgttcaaagtaccatgtgtttgtgtcggcagccctcatggagtactactgcagcaag
gagaaaagcatcgccctgaagatctttgagctgggtttgaagcggttcagtgactgtcca
gactatgcactcaactacattgagtttatgtcacatttgaacgaggacaataacaccagg
gtgctgtttgagagagtgctgagctcgggaagcatcactccagagaaatccatggatatt
tggagtcgattcctggcctttgagtctcaagttggtgacctggctagtatagtcaaagtg
gaaaaacgacgtgctcaaacaattgaaaaggtgcaagagtttgaaggcaaagagacagcg
ctgctgatagaccgctacaagtacctggacctcatgccttgctcagacagtgagctgaga
gccatcggctacctggctttgatcaagcagaacgtggtacagctgcctgcaagtcttggt
gccagcgcagcgcttcacactacagatatgaaggtgctgcctcagtttgccaagcggcca
cgctttcccaagcctgacattgagcagatgcttccattcaagcctcgagctcttgtccct
cctggctcccacccagttccaggcggagttttccctccaccgcctgctgctgccaacctg
ctgcagatcctgccaccgcctcagagcttcagtggaccacacattgtgattgacaagttc
atggagcacatggcgaacttgcagttacccagcggcccaatcggagtcccaaacggcacg
gatggacagttcagaatggatccaggcacacagtattccattgaccttttatcaggcaac
agaaagcgacgacacacagagaacgaagagagcgatgaagaaggcgagaactccatatca
gcgcccgcaaacgacatttatcgagcccggcagcagaagaaagtgaaataa
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