Littorina saxatilis: 138962612
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Entry
138962612 CDS
T10665
Name
(RefSeq) probable ribonuclease ZC3H12B isoform X1
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
lsax Littorina saxatilis
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138962612
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
138962612
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
KH_N4BP1_1st
zf-CCCH_4
zf-CCCH_2
PRORP
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
138962612
NCBI-ProteinID:
XP_070190588
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Position
LG3:52431798..52526603
Genome browser
AA seq
1152 aa
AA seq
DB search
MAQAEVVVDKSKLRLVNRYKEHILELYDVTVTVKTKCDETVGSVQLQDESGEKHDSTFAL
LSSSTSPKSVEKATVYLKAVLEESSDFTIARHSLSHEEFEMVRKNSDAIERRHLIVLDLS
RLELCMKGRGLHVQAARQQVQQLIMGQQSADPMDHGLTQSAVASSDFHLQQGEDFSVRKV
PVCDKDSGVEVREKSFGDQPFSPSFRDADNNLISGPSHSDPMRSYSLTTDAEQEQYLSVC
TSDFDLTPRGSSAGFGRTFAQVASAADARFGVDAVKDPRTGVISEVDFQEAESGRSSSSS
SDEDSGVGVMDKRDPRYNAWLTYAIKLGYIEADLDRVIGRHGLDCDENQMLHELIEGSAG
SGNAESEDFFEGGFSVSEPPPDFASTESELLKSVREKVSKSAEDSSSNLRHIVIDGSNVA
MSHGKNVFSCQGIRIAVDWFRQRGHKEITVFVPQWRKETSRPDTPITDQSILTDLEKQGI
VVFTPARRIKGRRVVCYDDRFVLKLAADTNGIVVSNDNYRDLLNEDQEYRKVVDERLLMY
TFVNDRFMPPEDPLGRRGPTLDNFLCKEPTSPPTLPPECPYGRKCTYGNKCKYYHPERGS
QPHKTVTEALREQATIKMQERAAKGPEQDKSRKPKPKLTRTRSLAPGEPLPSEKISPVSP
LPSGLKEPDSDPATSRVKSPTRGTSKTSDYLREHRRKLEEALAKVSLSDAAPVVPPPEPG
PISSPREALSPLPAMGSRVSSPSRLNVPFTSSQEGSLVSGHLLLAKKLSDEGSDTNFFNP
KTSSNRASPVMLAGPAGSGIGHHDSAQFNSLFDRRPSLQDHHFQTQLQNQQQYYTQPPHL
LARDSESASGTCVSGPARYHQDPAYQVQGMGSHCQSFPIMEKDSGRRALHRGYSEHPPSA
LSMAGSMSMEGGSREHTPLKPQHSVPSQFPPTPGTFQGRPFKGMMRQNSSSDTQLYMAGS
GDGTLPSHVSVPSFSGLDARGPQSVHSQAEPHSMQQHQHGLSRSTSVQPFPHQQSFIGPM
GLDRQCSEVVYSTQDRAAHTMHPYPQQWDMGSMYHSHPASPHYHPHPHLPATPSTHQPPP
PFIGSGVPQWQHNPMQRRSFPAEQPIPPSDPRYSLYYHLCSIFAEHRVRAVMNKYPDETD
PQKICASIMNTL
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggcccaagccgaagtggtggtagacaaatctaagttacgcctagtgaacagatacaag
gagcacattctagaactctacgacgttacggtcactgtcaaaactaagtgcgacgaaacg
gtagggtctgttcaacttcaagatgaatcgggcgaaaaacacgactcaactttcgctctt
ctatcctcttctacttcaccgaaaagcgttgagaaagcgaccgtttatctcaaggctgtg
ctggaggagagctcggacttcaccatcgcgcgacacagcctctcacatgaagagtttgag
atggtgcgtaagaactcagatgccatagagcgccggcacctgattgtgctggacctcagc
agactggagctgtgcatgaagggccgagggctccatgtgcaggccgccagacagcaagtg
cagcaactcatcatggggcagcagagcgcagaccccatggaccacggtctcacgcagtct
gccgtcgcttcctcagactttcacctgcagcaaggagaagacttctccgtcagaaaagtg
cctgtgtgtgataaggacagcggtgtagaggttcgggagaagagctttggcgaccagccg
ttcagcccctccttcagggacgccgacaacaacctcatctctggacccagccattcagat
cccatgaggtcctacagcctcaccacagatgccgagcaagaacagtacctctctgtctgc
acgtcagactttgaccttacaccgcgaggcagcagtgctggtttcggcagaacttttgcc
caagtggcctcggcggctgacgcgaggtttggtgtggatgcagtgaaggatccgaggact
ggtgtaataagtgaagtcgacttccaagaggcggagtcagggcgaagctctagctcgtca
tcggacgaagacagtggtgtaggggtgatggacaagagggaccctcgttacaacgcatgg
ctcacttacgccatcaaacttggctacatagaggccgacctggaccgtgtgatcggccgt
cacggcctggattgtgatgagaaccagatgctgcatgagctgatcgaggggtccgcaggg
tctggtaacgcagagagtgaggatttctttgagggagggttttctgtgtcagagccgccg
ccagactttgccagcaccgagtcggaactgttgaaaagtgtgcgggagaaagtgagcaag
tcggcagaggatagcagcagcaatctgcgacacatcgtcattgatggcagcaatgttgct
atgagtcatgggaagaatgtgttctcctgccaaggcattagaatcgcagtggactggttc
agacaacgcggacacaaggagataactgtgttcgtgccgcagtggaggaaagagacttcc
cgccctgatacgccaatcacagaccaaagtatcttgaccgacctagagaagcaaggcatt
gtcgtgttcacgccagctcgcaggatcaaagggcgaagggtggtgtgctacgatgatcgc
ttcgttctcaagttggctgcagatacgaacgggatcgtcgtctccaatgacaactatcgc
gacctgctgaacgaggaccaggaatatcgcaaggtggtggacgagagactgcttatgtac
acgttcgtcaatgacaggttcatgcccccagaggaccctctcggccgccgaggacctacg
ctggacaactttctgtgcaaggagccaaccagtccccctacgttgccgccagagtgtccg
tacgggcgcaagtgcacctacggcaacaagtgcaagtactaccaccctgagcgcggctct
cagccccacaaaactgtcacagaagcgctgagagaacaggccaccatcaaaatgcaagag
cgggctgccaaaggtccggagcaggacaagtctcgcaaacccaaacccaaactgacccgc
acacgatccttggctcctggtgagcctctgcccagtgaaaagatcagccccgtctccccg
ctgccctcaggactgaaggaaccggactcggaccccgctaccagcagggtgaagtcaccc
actagggggaccagcaagacttcggactacctgagggagcatcgcaggaagctggaggaa
gcactggccaaagtgtctctaagcgatgctgcccccgtagtgccgcctcctgagcctggg
ccgatctccagccctcgagaagcgctcagccctctccccgctatgggatcacgggtgtcg
tccccatctcgtctcaacgtgccgttcaccagcagccaggaagggagtcttgtcagcggc
cacctcctcctggccaagaagctgtcggacgagggctccgacacgaatttctttaacccc
aaaacgtcgtccaatcgggcgagccccgtcatgctggctggaccagccgggtcagggatc
ggtcaccacgattccgctcagttcaacagtttgtttgaccgccgcccatctctgcaggac
catcatttccaaactcagctgcaaaaccagcagcagtattacacccagccgcctcatttg
ctggcgagagactctgagagcgcctcaggtacctgtgtttctggcccagcgcgttaccac
caggacccggcctaccaagtgcaggggatgggcagccactgccaaagctttcctattatg
gagaaggactccggccgcagagctctgcaccggggctacagcgagcatcccccctccgcc
ctgtccatggccggcagtatgagcatggagggggggagcagggagcacacccctctcaag
ccccagcacagcgttcctagtcagttcccacccacccccggaaccttccaaggccgcccc
ttcaagggcatgatgcgtcagaacagctcttctgatactcagctctacatggctggctcc
ggtgatggcaccctaccctcccacgtctccgttccctccttctcggggctggacgcgcga
ggtccccagtcggttcacagtcaagcagagccgcactcgatgcagcaacatcagcacggg
ttgtcgcgctccacgtccgtgcagcccttccctcaccagcagtcgttcatcggccccatg
ggcctggatcggcagtgcagcgaagtcgtatacagcacccaggacagagccgcacacacc
atgcacccgtacccccagcagtgggacatggggagcatgtaccacagccaccctgcctcc
cctcactaccacccccatccccaccttcccgctacccccagcacccaccaacccccacct
cccttcataggctcgggcgtgcctcagtggcaacacaacccaatgcagcggcgcagcttt
ccggcagagcagcccatcccgccaagcgaccctcgttactctctgtactatcacctgtgc
agcatctttgctgagcacagagtgcgcgctgtgatgaacaagtatcctgacgagacagac
ccgcagaaaatctgcgccagcatcatgaataccttgtaa
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