Littorina saxatilis: 138965943
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Entry
138965943 CDS
T10665
Name
(RefSeq) collagen alpha-2(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
lsax Littorina saxatilis
Pathway
lsax04512
ECM-receptor interaction
lsax04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
138965943
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
138965943
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
lsax00535
]
138965943
Proteoglycans [BR:
lsax00535
]
Extracellular matrix (ECM) proteoglycans
Others
138965943
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
zf-FCS_1
Motif
Other DBs
NCBI-GeneID:
138965943
NCBI-ProteinID:
XP_070194126
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Position
LG5:complement(35727255..35743115)
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AA seq
664 aa
AA seq
DB search
MKERNDEDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDIQVKGDKGDLGPPGPRGSRGRTA
DKGERGIQGPIGLPGEEGPKGDEGDKGNSGDRGLRGYPGSDGSDGRSGPPGPPGPPGNPG
VPGASVDTNEISQIVPGPQGPPGVPGPPGEQGLKGSKGTSGDDGDKGTKGEQGIRGPAGR
DGKMGPAGPEGDPGARGSMGLKGDQGQPGTRGQPGFPGPPGQTGPLGPPGPTGLKGDKGE
RGLAGPPGIPGLVSEKGRAVWDDIVDQLQGSQGLPGPRGPPGSKGDMGPPGQQGFTGNDG
KRGLPGMPGPSGSIGIPGAPGMMGDRGDTGKTGPSGPPGIPGPSGTPGTPGFNGVKGDPG
ERGPEGPRGQPGMDGRSGTQGPVGPPGPVGAIGRSGIVGPAGPPGPPGEKGSVTYISQGG
GDVEAGPSGPAGPIGSPGSRGMPGERGASGKRGPSGPAGMPGVPGLPGPPGPHGERGLRG
QPGMPGMPGLPGRSISEQEVRELCYIVLRDHMEDLVANLQGPPGPPGRGKQGRTGNTGSM
GLPGDRGVPGPPGDRGFMGLPGLPGPQGPSGRAGDRGPKGDRGPSGKGKDGMPGPPGPSG
PTGPTGEGVMGRPGERGPPGSPGVHGHRGMPGPSGPAGYCEYCNYAAPAYQFQALARRNN
KKGP
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagaggaacgacgaagacgatgacgatgatgatgatgatgatgatgatgatgat
gatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgacatacaggtc
aagggggacaagggggacctaggaccaccaggacccagaggttcgcgtggaaggacggca
gacaagggcgagcgaggaatccagggacccatcggccttcccggcgaagaaggaccaaag
ggagacgaaggtgacaagggaaacagcggagaccgaggactgaggggctacccgggttca
gacgggtcggatggaaggtcaggaccccccgggccacctggaccccccggcaaccctggt
gtccccggtgcctcagtggataccaatgaaatcagtcagattgtgccgggtccacaaggt
cctcctggggtaccgggtccaccaggagagcaaggtctcaagggctccaaaggaacttcg
ggagacgacggtgacaagggtacgaagggggagcagggtatccgagggccggcagggagg
gacggcaagatgggaccggcaggacccgagggggacccaggcgcaagaggatccatgggt
ctcaagggcgaccagggacaaccaggcacgcggggacaaccaggttttccaggacctcca
ggacagacaggaccacttggaccaccaggacctactggactaaaaggggacaagggagaa
aggggtttggcgggtcctcctggcatcccaggcctggtgtcggagaagggccgagcggta
tgggacgacattgtcgaccagctccaaggatcacaaggactgccaggaccacgtggtccg
cccggtagcaagggagatatggggccaccaggacaacaaggattcactggaaacgacgga
aagcgtggactgcctggaatgccaggaccgtcgggatctataggcattcctggagcaccg
ggcatgatgggagacaggggagatacaggaaaaacaggaccatcgggacctccgggtata
ccaggaccatccgggacaccagggactccagggttcaacggggtcaagggggaccccggc
gagcggggaccggagggacctaggggccagcccggcatggacggcagatcgggaacacag
ggaccagtaggaccaccggggcccgttggggccattggcagatcgggtatcgtcggccca
gctggaccacccgggccaccaggggagaaaggatcagttacatacataagccaaggaggc
ggggacgttgaggcagggccgtcaggacctgcgggtcctataggatctccgggcagtcga
ggcatgccaggagagaggggtgcgtctggaaagaggggtccatcaggtccagcgggaatg
cctggggtacccggcctacccggtccacccggtccgcatggcgagagggggctccggggc
cagccaggcatgccgggaatgcccggacttccgggacgaagcatatcagagcaagaagtt
agagaattatgttatattgtacttagagatcatatggaagatttagtagccaacctgcaa
ggtccccccgggcccccgggcagagggaaacagggcagaactggtaatactggatccatg
ggattaccaggtgacaggggtgtgcccggaccgcccggtgaccgagggttcatgggactg
cccggcctgcctggacctcagggcccatctggcagagcgggtgatagaggcccgaaaggc
gacagaggtccatcaggaaaaggaaaggatggcatgcccggtccacctggtccttctggt
cctactggcccaaccggtgaaggggtaatgggtcgccccggtgaaagaggccccccgggc
agcccaggtgtgcacggtcaccgtggaatgccgggcccctctggccctgcaggatattgc
gagtactgtaattatgccgccccggcgtaccagttccaggcgctcgcgcgaagaaataac
aaaaagggcccgtaa
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