Littorina saxatilis: 138967106
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Entry
138967106 CDS
T10665
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lsax Littorina saxatilis
Pathway
lsax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138967106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138967106
03041 Spliceosome [BR:
lsax03041
]
138967106
03009 Ribosome biogenesis [BR:
lsax03009
]
138967106
03016 Transfer RNA biogenesis [BR:
lsax03016
]
138967106
Enzymes [BR:
lsax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138967106
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
138967106
Spliceosome [BR:
lsax03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
138967106
Complex C
U4/U6.U5 tri-SnRNP related factors
138967106
Ribosome biogenesis [BR:
lsax03009
]
Eukaryotic type
Pre-60S particles
Helicases
138967106
Transfer RNA biogenesis [BR:
lsax03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
138967106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
DBC1
Motif
Other DBs
NCBI-GeneID:
138967106
NCBI-ProteinID:
XP_070195686
LinkDB
All DBs
Position
LG5:complement(39024265..39077457)
Genome browser
AA seq
1020 aa
AA seq
DB search
MADAFGDELFDVFEENSGSAPIVRPDNSDDTRDSSKRADDLFKQVTTKRPAEGEENEGPV
KKLRGEETSVEVMPRIQVHKVETVEACQHEVAVPPDHEFLGLQQSNSQPAKEYPFVLDPF
QKEAILCLENNQSVLVSAHTSAGKTVVAVYAIAMSLRDKQRVIYTSPIKALSNQKYRELY
EEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKERG
VVWEETIILLPDNVHYVFLSATIPNATQFAEWVCHLHNQPCHVVYTDYRPIPLQHYIYPA
GGDGLHLAVDENGDFREENFNTAMSVLKEAGDAAKGDQRGRRGGSKAHESSIFKIVKMIM
ERNFAPVITFSFSRKECEAYGMQMSKLDFNTEDEKKLVEEVFNNAIDSLSDDDKKLPQVE
HLLPLLKKGVGIHHSGLLPLLKETIEILFSEGLIKALFATETFAMGLNMPARTVLFTSCR
KFDGKDFRWVTSGEYIQMSGRAGRRGLDERGIVILMVDDLMTPSAGKAIVNGLPDPLNSA
FHLTYNMVLNLLRVEEINPEFMLERSFYQFQNYAAIPGLLEKLKKCEDKYHKMDITEEES
VSSYFRIRQQLDNLGRDLRAFILKPVYLLPFLQPGRLVRIKNKDDDFGWGVVVNFQKKMD
QSGATEDTGPLYVVELLLYLSKESTRSRSTANLKPCPKGEKGEMQVVPILTKLIQSLSAI
RLYIPSDLRSSEHRLSVYKSMQEVEKRFPDGLPLLDPIEDMGIKEKGLKEVIKKIEAFEH
RLYTHPLHKDPRLEELYSSFEKKTQLGNEIKALRLELKKKKSLLQMDELKCRKRVLRRLG
YATASDVIETKGRVACEISSGDELVMTELLFNNVFNDLSPAQCCALLSCFVFQERASEMP
KLTEELSGPLRLMQETAKRIARVSKEAKLEIDEEEYVESFRPHMMDIVYEWCNGCSFSKI
CKMTDIFEGSVIRCMRRLEETLRQMVQASKAIGNTELENKFAEGIRLIKRDIVFAASLYL
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcttttggagacgaattatttgacgttttcgaagaaaattcaggctcagca
ccaatagtacggcctgataacagtgatgatacacgcgatagttctaagagggcagatgac
ctgtttaaacaggttacgaccaaaaggccagcagagggtgaagaaaatgaaggtcctgtt
aagaagcttcgtggggaagaaacaagtgtggaggtgatgccacgcattcaggtgcacaaa
gtggaaaccgtggaagcttgtcaacatgaggtagcagttccgcctgaccatgagtttctg
gggctgcaacagtcaaacagccagccggccaaagagtacccctttgtcctcgaccctttc
cagaaagaagccatcttgtgtctggaaaacaaccagtccgtgttggtgtctgcccacaca
tccgctggaaagactgttgtggctgtgtacgccatcgccatgtccctgcgtgacaagcaa
cgagtgatctacacgtcccccatcaaggcgcttagcaaccagaagtaccgggagctgtat
gaggagtttcaggatgttggtctgatgactggggacgtcaccatcaaccctaccgccagt
tgtcttgtcatgaccacagagatcctgcgaagtatgctgtacagaggttcagagatcatg
cgtgaggtggcctgggtcgtctttgatgagattcattacatgagagacaaagagcgaggt
gtggtgtgggaagagaccatcatcctgctgccagacaacgttcactacgtctttctctct
gccactatccccaacgccacacagtttgcagagtgggtttgtcacctgcacaatcagccc
tgccacgtggtgtacacagactatcgccccatcccccttcaacactacatctatcctgct
ggtggggatggtctgcatctggccgtcgatgaaaatggagattttcgtgaagagaacttc
aacacagccatgtccgttctgaaggaagccggagacgcagccaagggagatcagcgaggc
agacgaggaggctcaaaagctcatgagtcgagcatcttcaagattgtgaagatgatcatg
gagaggaactttgcccctgtcatcactttcagcttcagtcgcaaggagtgtgaggcatac
ggcatgcagatgtcaaaactcgacttcaacacagaggacgagaagaaactggtggaagaa
gtgttcaacaatgctattgattccttgtcagatgatgataagaaactgcctcaggtggag
cacttattaccactgctgaaaaaaggagttggcatccatcactcagggctgctgcctctt
ctgaaagaaaccattgagatcctcttctctgagggactcatcaaggctctgtttgccaca
gagacatttgctatgggtctcaacatgcctgcccgcactgtgctcttcacaagctgtcgc
aagtttgacggcaaagacttcagatgggtgacatcaggggagtacattcagatgagcggc
agagcaggacgtcgaggtcttgacgagcgtggaattgtcatcctgatggtggatgacctg
atgactcccagtgctgggaaagccattgtcaatggtttaccagacccactgaactctgct
ttccacctaacttacaacatggtgctcaacttgctgagagtggaggagatcaacccagag
ttcatgctggagaggtccttctaccagttccagaactacgctgccattcctggactgcta
gaaaagctgaagaaatgtgaggacaaataccacaaaatggacatcacggaggaggaatcg
gtgtcctcgtacttccgcatccgtcagcagctggataaccttgggcgtgaccttcgtgcg
ttcatcctcaagcctgtctaccttctgccctttctccagcctgggaggcttgtcaggata
aaaaacaaagatgatgactttggctggggtgtagtggtcaacttccagaaaaagatggac
cagagcggggcgacagaggatacggggccactgtacgttgtggagttgctgttgtacctg
agcaaggaaagcactcgcagtcgcagcactgccaatctcaaaccttgtcccaagggcgaa
aaaggagagatgcaggtggtgcccatcctgaccaagttgatacagtcgctgagcgccatc
cgtctctacatccccagcgacctgcgctcctcagaacatcgcctcagcgtctacaagtct
atgcaggaggtggagaagcgcttccctgatggtctgcccctgttggaccccattgaggac
atgggcatcaaggagaaaggcctcaaggaagtcatcaagaaaattgaggcctttgaacac
aggctctacacacacccattacacaaagacccaaggctggaagaactgtactcgtcattt
gaaaagaaaacacagcttggcaacgagatcaaggctcttcgtctggagctgaagaagaaa
aagtccctgctgcagatggatgagttgaagtgcaggaaacgagtgttgcgtcgcctaggt
tacgccacagcttccgacgtcattgagacaaagggcagagtggcctgtgaaatctcaagt
ggagacgaactggtgatgacggagctgctgtttaacaacgtgttcaacgacttgagtccc
gcccagtgctgcgctctgctcagctgcttcgttttccaggagcgagcatcagagatgccc
aaactcaccgaggagttgtctggaccacttagactcatgcaggagacagccaagaggata
gcacgggtgagcaaggaagccaagctggagatagacgaggaggagtatgtggagtcattc
cgccctcacatgatggacattgtgtacgagtggtgcaacggatgctccttctccaaaatc
tgcaagatgaccgacatctttgaaggcagtgtgattcggtgcatgaggagactggaggag
acactgcggcagatggtccaagcatcaaaagctatagggaacacagaactggaaaacaag
tttgcagaaggtattcgtctgatcaagagggacattgtgtttgctgcaagtttgtacctg
tga
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