Littorina saxatilis: 138968254
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Entry
138968254 CDS
T10665
Name
(RefSeq) DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
lsax Littorina saxatilis
Pathway
lsax03440
Homologous recombination
lsax03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
138968254
03450 Non-homologous end-joining
138968254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsax03032
]
138968254
03400 DNA repair and recombination proteins [BR:
lsax03400
]
138968254
DNA replication proteins [BR:
lsax03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
138968254
DNA repair and recombination proteins [BR:
lsax03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
138968254
BRCA1-C complex
138968254
NHEJ (non-homologous end-joining)
MRX complex
138968254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
AAA_16
AAA_29
AAA_13
ABC_tran
Baculo_PEP_C
AAA_22
AAA_28
Motif
Other DBs
NCBI-GeneID:
138968254
NCBI-ProteinID:
XP_070196917
LinkDB
All DBs
Position
LG6:complement(1065442..1122922)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSWIERMSIMGIRSFGPEDSDRQIMQFFSPLTLIVGPNGTGKTTLIECLKYITTGDFPPN
AKGAAFVHDPKVAHETVVRGQVRLQLRDVTGKIMQVQRSIESTQKAKKIEARTLDAVVTR
INAEGEKVSIATKCIDFDREMVTALGVSKAILENVIFCHQEDSCWPLSEGKALKDKFDAI
FASTRYVKVLDNIRALKKDQDGNLKIYKEEIKYLAQHKEKAAQLEGDLAELEAKYEASKE
NVIKIEKQLEPIRQRLTDIGQRYDEIYKIQSKIESFKSRKGQMESTVKSLLDNIENEFQG
PTEELEKLLSEFADKVQDHRSNLSQFEHRGEDLAQKLNTLDREKSGLLLEVGKLEQEAAV
HEDNIRRRDATIRKLSVEFGFEGFDRGAITEERYRTFLDKVRQKTETMMEEIRTVKADFE
KQEQALQQRMDAARDKKTQLEQTQRYKKEQMDKNKAEIRQIKQKLSHMEASAGRLDNLKQ
ELKNAERDLSVAESTVNVDELKRDITQLDRERKQLDAKMNELNSEMSRLHLQSNTRAQLD
MLKKDKTSKEDNIRRIKAKHEDSLTHILGSATTTNIRGRLEEYISRQTESTRRCSSELQK
AKNQLSQKEAEKNLLSKQIRDKEEEVRALVERIHGVCGSQNYEEGFQTVQQKLSEAQDQK
GSLLGADHFFKKYVRELERDHPCCPLCHREFDAEQEVRELVLELQNKLRMVPTKLQRAEE
ELMEHQQGYDNMMQLRPIKESLAVIQDRDLPNLKKRLQKVTEEMATLKEFIDEKGEELAM
KEVDEGMGKDMQPDIVLMDRYQGELRELDKKIAAQSGKLAGGDADRTLEVVVNEKDDIQM
KLETVSRQLEHKRQKLSDHTEHVQSLRSQVNGLQTEKLEIDAELQERTKLEETQAQLTSD
NIEHDADIKAAQEQLRPLEDEIGRHRREKATVTGDKEAAVEQGKNAVDDVRGKEKIVKDF
NENIKAYNKSGKQGRLEKSRDRQREISVDQGKLDAEQEEVTANVNKMRKILATQQIHERE
LSDNLQLRKQQEEIERLERQMADLQKELGGLDPKNLERERQKLLQRDDEFNKELNKATGR
QQGYEDQMKQTKRELNSDLFRDAAKKHREKMIDLRTTELANNDLEKYYKAMDRAIMNYHS
TKMTEINMIIRELWRNTYRGNDIDTIEIRSDDDDGSSIKARRTYNYRVVMLKGDTALDMR
GRCSAGQKVLASLIIRLALAETFCMNCGVFALDEPTTNLDQENIDSLAHALVRIIETRSV
QRNFQLIVITHDETFVEKLGRSDLTEFVWKVSKNHNGNSRLNKDTIQQFQHR
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtggatcgagaggatgagcattatgggaatacggagcttcggccccgaggactct
gaccgacagatcatgcagttcttcagccctcttactctcattgtggggccaaacggcaca
ggaaagacgaccctcatagagtgcctaaagtacatcaccacaggcgactttccacccaac
gctaaaggggcagcattcgtacatgatcccaaggtggctcacgagacagtagtgcgaggt
caggtacgactgcagctgcgagacgtcactggtaaaattatgcaggttcagaggtcaatc
gagtccacgcaaaaggccaagaagatcgaagcgcggacactggatgctgtggtgacgcgt
atcaacgctgaaggggaaaaagtcagcatcgccaccaagtgcatcgactttgacagggag
atggtgacagccctaggggtgtccaaggcaattctggagaacgtgattttctgccatcaa
gaagattcctgttggccgcttagcgagggcaaggccttgaaagacaagtttgacgccatc
ttcgcttccacccgttacgtcaaagtgctcgacaacattcgtgctctcaaaaaggatcag
gacggcaacctgaagatctacaaggaggagattaaatacctggcacagcacaaggagaaa
gcagcacagctggagggagacctcgcggaactggaagcaaagtatgaagcgtcgaaagag
aatgtcatcaagattgaaaagcagctggaaccaatcagacaacgcctcaccgacatcgga
cagcgttacgatgagatctacaaaattcagtcaaaaattgaaagcttcaagagtaggaaa
ggtcagatggaaagcacagtaaagagtctccttgacaacatcgagaatgagttccaaggc
ccgacagaggagttggagaaattgctgtcagagtttgcagacaaagttcaggatcacagg
agtaatctgagtcagtttgagcatcgtggcgaggacctggcacagaaactgaacacgctg
gatcgggagaagagcggcttgctgctggaagtgggcaaactggaacaagaggctgccgtt
catgaggataacatccggaggcgagatgcaaccatcagaaagctttctgtggagtttggt
ttcgaaggttttgacaggggcgccatcacggaagaaaggtacaggacgtttctggacaaa
gtccggcagaaaacggaaaccatgatggaggaaattaggacggtaaaggcagactttgag
aagcaagagcaagccctgcagcagaggatggacgcggcccgggacaagaagacacagctg
gagcagacgcagcgctacaagaaggagcagatggacaagaacaaggccgagatacgtcag
atcaaacagaagctgagtcacatggaggcgtcggcaggacgtctagacaacctgaagcag
gaactcaaaaatgctgagcgggatctttctgttgcggaaagcaccgttaacgtggatgaa
ctgaaaagggacatcactcaactggatagagagcgcaaacaattggacgctaagatgaat
gaactcaactccgagatgagtcgccttcaccttcagtcgaacactcgagcgcagcttgac
atgctgaagaaagacaagacgtccaaggaggacaacatccgcagaatcaaagcaaaacac
gaagactccttgactcatatcctgggcagtgccaccaccacaaacattaggggacgactg
gaggagtacatcagccgtcagacagaatccaccaggagatgttcctcagagctgcagaaa
gccaaaaatcaactctcgcagaaagaagcggagaaaaatctgctgagcaaacagatcagg
gacaaagaggaagaagtcagagcgttggtggagaggatccacggtgtgtgtgggagtcag
aactacgaggaagggttccagaccgtgcagcagaaactgtctgaggcacaagatcagaag
gggtcgttgctgggggcggatcattttttcaagaagtacgtgcgtgagttggagagagac
cacccatgctgccctttatgtcaccgcgagttcgatgcagaacaagaagtgcgagaactg
gtgctcgagttgcaaaacaagctgcgcatggtgcccaccaaactgcagcgagcggaggag
gagctgatggagcaccagcaaggttacgacaacatgatgcagctcagaccaatcaaggag
tcgcttgccgtaatccaggatcgcgacttgccaaacctgaagaaacgcctgcagaaagtc
actgaggagatggcaacactgaaggaattcatcgatgagaaaggcgaggagctggccatg
aaagaggtggacgaggggatgggcaaggacatgcagccggacatcgttctcatggaccgc
taccagggggagctgcgagagctggacaagaaaattgccgctcagtccggaaaactggca
gggggagatgctgaccgaacgctggaggtggtggtcaatgagaaagatgacattcagatg
aagttggagacggtaagccgccagctggagcacaaacggcagaagctgtcggaccacacg
gagcacgtgcagtcgctgaggtcacaggtcaacggcctgcagacggagaagctggagatc
gacgcggagctgcaggagagaactaagctggaggagacccaggctcagctgaccagcgac
aacatcgagcacgacgcagacatcaaggccgctcaggagcagttgcgtcccttggaggat
gaaatcggtcgtcatcgccgggaaaaagcgacagttacaggggacaaggaggccgcagtg
gaacaaggcaaaaacgctgtggatgacgtgcggggcaaggagaaaattgtgaaggatttc
aacgaaaatatcaaagcttacaacaagtcagggaagcaaggtcggctggaaaagagccgt
gatcgtcagcgagagatcagtgttgatcaaggcaaacttgacgcagagcaagaagaggtc
accgccaacgtcaataagatgaggaaaattctcgccactcagcagattcatgagcgagag
ttgtcggacaacttacagctgcgcaagcaacaggaggagattgagagactggagcgacag
atggctgaccttcagaaagagctgggtggccttgacccaaaaaacctggagcgagaaagg
cagaaacttcttcagagggacgacgagtttaacaaagagctgaacaaagccacgggtcga
cagcagggttacgaggatcagatgaagcagaccaagcgagaactcaattctgacctgttc
cgcgacgcagccaagaaacacagagagaagatgattgacctcagaacgacagagctggcc
aacaatgaccttgagaagtactacaaggccatggaccgtgccatcatgaactaccactct
accaagatgaccgagatcaacatgatcatcagagagctgtggaggaacacgtaccgggga
aacgacattgacaccatagagattcgatcggacgatgacgatggaagcagcatcaaggcg
cgtcggacgtacaactaccgcgtggtcatgctgaaaggggacaccgctctcgacatgagg
gggcgctgcagtgcagggcaaaaggtgctggcttctctcatcatccgcctggccctggcc
gagacgttctgcatgaactgcggcgtcttcgctctggacgaaccaaccaccaacctggac
caggaaaacatcgacagtctggctcacgctctagtcagaatcatcgagacgcggagcgtg
cagcgtaacttccagctgattgtgatcacacacgacgagactttcgtggagaagctgggt
cgctccgacctcacagagtttgtatggaaggtctccaagaaccacaacggcaactccagg
ctgaacaaggacaccatccagcagtttcagcatcgctaa
DBGET
integrated database retrieval system
