Littorina saxatilis: 138969244
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Entry
138969244 CDS
T10665
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
lsax Littorina saxatilis
Pathway
lsax03013
Nucleocytoplasmic transport
lsax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138969244
09122 Translation
03013 Nucleocytoplasmic transport
138969244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138969244
03041 Spliceosome [BR:
lsax03041
]
138969244
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
138969244
Spliceosome [BR:
lsax03041
]
Complex C
Other components
EJC/TREX
138969244
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
138969244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
138969244
NCBI-ProteinID:
XP_070198089
LinkDB
All DBs
Position
LG6:41699488..41765277
Genome browser
AA seq
1507 aa
AA seq
DB search
MALHCLSAESLKTWEKTGKYDFVKHCKGLSDNDPYAPQRQNLSRALYELCDLVLKGQLKV
EAAAATIADVADQVKNFPSVMADVLGIIDVETSCSEEKTTREKFVALVAAVSSLVTESLL
KERLEQDTLEVAGLVSSRQQFQQKYVKTKTRLYYKQQKFNLLREESEGYSKLIVELNQEI
TDLITPKSVLQHIKSLIGCFDLDPNRVIDVMLEAFECRPHLQDFFLPLLRSYVSDAVTLC
HIVGFRFHFYLPQECETPSSLFQVAALLVKNGLLDLDTLYPHLLPTDSDMQQHQQKELQD
AKTYAKRLNTIIVGEKKEEDKDKGEMEKPEMKANNQKLGLCEALLEIGAWDNAKVILDGL
PDAFAISHKPIVQALCRLIHAAIDPMYSKYTGLSSALTKRRPVPVKRPGVEVLTTFADLS
RVAFPMVLYLGPHIATDPPLLVKLIRIGRAFMNKRHDGHLSSSDEAAYYGLLSVVDDSLL
PSLSLQPGNCCMAEELWGLVRHYPYEIRYRMYGHWKNETYYTHPKLIRVRADTVERAKYI
MRRISKETVKPSGRQLGKLGHSNPGVLFELILTQIQRYENFISPIVDSLKYLTPMSYDIL
AYCIIEAVANPEKERMKTDDTNISMWLQSLANFAGAICRKYTIELTGIMQYVANQLKAGK
SLDLLLLREVVQKMAGIEVSEEITDDQLNALSGGELLRQEGGNFQQVRNMKKSSTRLKDT
LLERDLGLSLCLLMSQQRSSVVFREDDNRHLKLVGKLYDQCQDTLVQFGSFLSNQLSTEE
FVKRLPPIDTLIATYHVPQDAAFFLSRTQYTHSIHTRYEELRKADKKSSNSVSLKQRYIE
STEETQKPVLETLRPLFPARIWEDFTPLFYWTFWSMSMYDLRVPSQAYEKQIQLLHTQIQ
QTDDSKDMPQSKKKKERERCQQLIEKLKDEEKKQTEHVAQVMARLKKERESWFPSGTTKS
EMTTNFLQMCLFPRCRFTASDALYCGYFIQVLHTLKTPNFSTLICYDRIFCDITYTLTSC
TENEGHRYGRFLASALDTIMRWHGSFNIYDKECANYPGFVTVFRKGSDSNNKMDRLDFEN
FRHVCHKWHFRITKAIIACLESGSFIQIRNALIILTKILPHFPRIVQIGMAIERRVDKLS
KEEKDKRPDLYALAIGYSGQLKMKKATWVPEADFHIKEPKAQAKGAAAAGSTKDGPQAAN
SRKTDDGKTKDGRGGESKAETRDDRNKDKSERRDKGEKREKRESKKASVNNMDASDHSDS
PKHQKDRAGEDKKGKEPAAAARGAEPEEGGRHKEAKGDKLGKEEKAKKGDKKDKERGKER
DKGKRGHGNHEDEETGPSTSSSHRRSLEPPPLDDREMKRRKLEMAGTSSQQDSPSDNTSR
SKNKSPTAEREFGDRERDSREQRKEKKREHSMDGGDADMKKRRGGEEYYDHHHDHHTQKS
KLNGEQNGSGSRSREERSDRSHSKERTKHDGAAKLKESRKDATPTSDESPRSSKSKEKKS
SSKKQKK
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgcactgcctcagtgccgaatccctgaaaacgtgggaaaagacaggaaaatat
gacttcgtgaaacactgcaaaggattgtcagacaatgatccgtacgctccacaacgacag
aatctcagcagagcgctctacgagctctgtgacctggtgcttaaaggccagctgaaagtg
gaagcagcagctgcaacgatagcagatgttgctgatcaagtcaagaacttcccttctgtg
atggctgatgtgctgggcatcatagatgtggagacatcatgcagtgaagaaaaaaccacg
agggaaaagtttgtggctttggtggctgctgtttctagcttggtgactgagagccttttg
aaagagcgtttggagcaagatacgctagaagtggccggccttgtgtcgtcaaggcaacag
ttccagcagaaatatgtcaagaccaagactcggctctactacaagcagcagaagttcaac
ctactgcgtgaggagagtgagggctactccaagctgatagtggagctcaaccaggagata
acggacctcatcacaccaaagtcagtactgcagcacatcaagtcgctcattggctgcttc
gaccttgaccctaaccgtgtgattgatgtcatgctggaggcgtttgagtgtcggccacac
ctgcaagacttcttccttcctctgttgaggtcttacgtctctgatgctgtcacactctgc
cacattgtgggcttcagattccacttttatctgcctcaagagtgtgagacaccgtcctca
ttgttccaagttgcagctctgttggtcaagaatggacttctggacctggatactctctat
ccccatctcctgcccacagacagtgacatgcagcaacatcagcagaaggagctacaggat
gccaagacctatgctaagcgtctcaacaccatcattgttggcgagaagaaagaggaggac
aaggacaagggggagatggagaaacctgaaatgaaagccaacaaccagaagcttgggctg
tgtgaggcgttgctggagattggtgcctgggacaacgccaaggtcattctggatggtctg
cccgacgcctttgccatttcccacaaacccattgtgcaggcactgtgcaggcttatccat
gctgccattgaccccatgtacagcaagtacacaggcctgtcgtcagctctgaccaagcga
cgtccagtgccggtcaagcgtccaggagtggaggtgctgaccacctttgctgacctgagt
cgagtggctttccccatggtgctgtacctgggacctcacatcgccactgacccacccctg
ctggtcaagctgatacgcataggcagggcgtttatgaacaagcgtcatgatggccacttg
tcatcgtcggatgaagcagcgtactacggtttgctgtcagtggtggacgactctctcctg
ccttcgctgtcactgcagcctggaaactgctgtatggctgaggagctgtggggactggtc
agacattacccttatgagatcaggtaccgcatgtatggccactggaagaacgagacatac
tacacacatccaaagttgattcgtgttcgtgcagacacagtggagagagccaagtacatc
atgaggcgaatatccaaggaaacagtgaagccatctggtcgacagttggggaaacttggt
cacagcaacccaggggttctgtttgaactgatcctgactcagattcagaggtatgaaaac
ttcatcagccctattgtggactcactcaagtacctcactcccatgtcctacgacattctg
gcttactgtatcattgaagcagtggccaatccagaaaaggagaggatgaagacggacgat
accaacatctccatgtggctacaaagtttagccaattttgctggagccatctgtcgcaag
tacaccatagaactgacaggcatcatgcagtatgtggccaaccagctcaaggctggtaaa
agtttggacctgctgttgctgagggaggtggtgcagaagatggcgggcattgaggtgtct
gaggagatcactgacgatcagctcaacgccctgtctggcggggaactcctcaggcaagag
ggaggcaactttcagcaggtgcgcaacatgaagaagtcgtctacgcggttgaaggacaca
ctgttggagcgtgacctgggcctgtccctgtgcctcttgatgtcccagcagcgaagcagt
gtggtgttcagagaggacgacaaccgccacttgaagctggtgggcaagctctacgaccag
tgccaggacacgttggtgcagtttggcagtttcctgtccaatcagctgtccacggaggag
tttgtcaagcgcctgccccccatcgacaccctcatcgccacctaccacgtccctcaggac
gcagccttcttcctctctcgcacacagtacacccacagcattcatacacgttatgaagaa
ctgcgcaaagctgacaagaagagcagcaactcggtttcactcaagcaaaggtacatagaa
tccacagaggaaacacagaagccagttctggagacgttacgaccactctttccagccagg
atatgggaggacttcacgccgctgttctactggacgttctggtccatgtccatgtacgac
ctgagggtgcccagccaggcgtacgaaaaacagattcagctgctgcacacacagatacag
cagaccgatgacagcaaagacatgccacagagcaagaagaagaaggagcgagaacgatgc
cagcagttgattgagaagctgaaggatgaggagaagaagcagacagagcatgtggcgcag
gtcatggcaaggctcaagaaggaacgagagtcttggtttcccagtggaacaacaaagtct
gagatgacgaccaacttccttcagatgtgcctgttcccacgctgtcgcttcacggccagt
gacgctctctactgcggctacttcatccaggtgctacacactctcaagacgcccaacttc
tccactctcatctgctatgatcggatattctgtgatatcacatacaccctgaccagctgc
acggagaacgagggtcaccgctatggtcgtttcctcgccagcgccctggacaccatcatg
agatggcatggcagcttcaacatctatgacaaggagtgtgccaactaccctggctttgtg
acagtgttccgcaagggctctgacagcaacaacaagatggaccgcctggactttgagaac
ttcaggcacgtctgtcacaagtggcatttccgcatcaccaaggccatcattgcctgtctg
gagtcagggagcttcatccagatcaggaacgctctcatcattctcaccaagatcctgccc
cacttcccacgcatcgtgcagatcggcatggccatcgagcggcgggtggacaaactgagc
aaagaggagaaggacaagagaccagacctgtatgccctggccatcggatactctggacag
ctgaagatgaagaaggccacatgggttcctgaggcagatttccacatcaaagagcccaaa
gctcaagccaaaggagcagcagcagcaggcagtaccaaagacggaccacaggctgcaaac
agcaggaaaactgatgatggtaaaacgaaagacggacgtggtggggaaagcaaggcagag
acccgggatgatcgcaacaaggacaagtctgagcgcagggacaagggggagaagcgtgaa
aaaagggagagcaaaaaagcttctgtaaacaacatggatgcttcggaccattcggattca
ccaaagcaccagaaggacagagcaggggaggacaagaaaggcaaggagccagcagcggcc
gcacgaggggccgagccagaggagggagggcgccacaaggaggccaagggagacaagctg
ggcaaggaggagaaagccaagaagggagacaagaaggacaaggagcgaggcaaggagcgg
gacaagggcaagcgaggtcacgggaatcatgaggacgaggagacggggccgtctacgtca
tcatcacatcgacgcagcctggagccacctccccttgatgacagagaaatgaagcgtcga
aaactggagatggcaggaacaagttctcagcaggacagccccagcgacaacactagtcga
tccaagaacaagagcccgacagcagagagagagtttggcgacagggagcgcgacagcagg
gaacaacgcaaagaaaagaaaagggagcattctatggatggtggcgatgcggacatgaag
aagcggcgtggtggagaggagtactacgaccaccaccatgaccaccacacccaaaaatcc
aagctgaatggtgagcagaacggttcgggcagtcgtagccgtgaggagcggtccgacaga
agtcacagcaaggagagaactaaacacgatggtgccgccaaactcaaagagagcaggaag
gatgccacccccacatctgatgagtcccccagatcctccaagagcaaagagaagaaatcc
tcctccaagaagcaaaagaaatga
DBGET
integrated database retrieval system
