Littorina saxatilis: 138970561
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Entry
138970561 CDS
T10665
Name
(RefSeq) transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
lsax Littorina saxatilis
Pathway
lsax03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
138970561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsax03021
]
138970561
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138970561
Transcription machinery [BR:
lsax03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
138970561
RNA polymerase I system
138970561
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
138970561
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW4_SPT5
KOW5_SPT5
KOW6_SPT5
Spt5-NGN
KOW2_Spt5
KOW
KOW7_SPT5
KOWx_SPT5
Spt5_N
GPKOW_C
DUF3912
PPV_E1_N
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
138970561
NCBI-ProteinID:
XP_070199127
LinkDB
All DBs
Position
LG7:6784043..6828643
Genome browser
AA seq
1088 aa
AA seq
DB search
MSDSEDSNFSDAGSEGGDLNEPKDEGSDAAPDGSDVDEDKEDADESGGGGGGGGGKKKKG
RRIADDDDDGSGGSGGSDDGSEDDTDFDDEDEMEERGRPKKKKRKGALGFIIDEADVDEE
DEEDEEWEEGAEELIDRRSTYEGPSAKEIESHQRLKQIWESQHEDEIEAYYKQRFGDSSA
TDRFGEGEEMSDEITQQGRLPGVKDPNLWVVKCRMGEEKDVVVHVMRKVITYQFTEEPLQ
IKSVVAKEGLKGYIYIEAYKQTHVKQAIEGIGSLRIGYYQQQMVPIKEMTDVLKVVKETA
NLKPKTWVRLKRGVFKDDLAQVDYVEPSQNIVHIKMIPRTDYSQPRGIMRTASNQDQGKK
RKRKPPQKLLDVDAIRSIGGEVSTDGDFLIFEGNRYNRKGFLFKSFAMSAIVSEGVKPTL
SELEKFEEQTEGMDVELAPEKSTAGEVTHSLASGDMVEVVEGELIRLQGKVIKVDGNKIT
LLPKHEDLKDPLEFSANELQKFFKMGDHVKVIKGRYEGDTGLTVRVEPNMIVLFSDLTMH
ELKVRPDDIQLCTDMATGVDSLGQFQFGDLVQLDPQTMGVIVRLEKENFQVLSMQNRVVS
VKPQSVTRKRDTRHAVALDSENNNIQVKDMVKVIDGPHSGRNGQIMHLYRSFAFLLSRMM
TDNGGYFVCRTRHLVLAGSSGNASLGTMGGMAPMSPRLSSPAHPSSGGGDAKQGGGRGRG
VATRRDREVIGQTVRIRQGPFKGYIGIVKDATEDTARVELHSSCKTISVDKSRLSTLTGP
RAGAGAGGRTSTYDGRTPTYGGQTPMYGSRTPMYGSQTPLNDGSRTPHYGGQTPLHEGSR
TPSGAGGSAWDPSNANTPSRMNDFDYNYDESASPADFATTPNPATPGYTTDTPSPVGPYT
PQTPGSTYSPYHHTAPSPANFQAPSPGGYNSPSPSGYQPSPSPGTFAGTPSPSGMGFSPM
TPGAPFTPQTPGTAMDHSLSDWHTTEIVVRIKETHDNTELIHQTGVVRSISGGHCSVYIP
VEDKVVNIACEHLEPVQPEKHDKVKVILGDERETVGSIISIDGSEGVFKTEDGNIRMLPI
KHLCKMTG
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaagacagcaacttttctgatgccgggagtgagggcggggatctgaac
gaaccgaaggatgaaggcagtgacgctgcccccgatggaagcgatgtcgacgaagacaaa
gaagatgcggatgagagtgggggaggaggaggaggaggaggaggaaaaaagaagaaggga
cgacgtattgctgatgatgatgacgatggctcgggtggctcaggtggctcggacgatggt
tcggaggatgatactgattttgacgatgaggatgaaatggaagaaagaggacgtcccaaa
aagaagaagaggaaaggcgcccttggtttcatcattgatgaggccgatgttgacgaggaa
gatgaagaggacgaggagtgggaggagggggcggaggaactcatcgaccgacgctccacc
tacgagggacccagtgccaaggagatcgagagccaccagcgactcaagcagatctgggag
agccagcatgaagatgagattgaggcatactacaagcagcgcttcggggactcctctgcc
accgaccgctttggggagggcgaggaaatgtccgacgagatcacgcagcaaggtcgtctg
ccaggcgtcaaggaccccaatctgtgggtggtaaagtgtcgcatgggggaagagaaagac
gtcgtcgttcacgtcatgcgcaaagtcatcacataccagttcaccgaggagccgctgcag
atcaagtcggtggtggccaaggagggtctgaagggctacatctacatcgaggcgtacaag
cagacccacgtcaagcaagccattgagggcatcggcagcctccgcatcgggtactatcag
caacagatggtgcccatcaaagagatgacggatgtgctgaaggttgtcaaggaaacggct
aatctcaaacccaaaacctgggtgcgcctcaaacgtggagtcttcaaggatgatctggct
caggtggactatgtggaaccgtcgcagaacattgtccacatcaagatgattcctcgcacc
gactacagccagccccgcggcatcatgcgcaccgcctcaaaccaggaccagggcaagaag
aggaagagaaagccgccacagaaactgctggatgtggacgccatcaggtctatcggaggt
gaggtcagcacagatggagactttctcatcttcgagggcaacagatacaaccgtaaaggt
ttcctcttcaagagcttcgccatgtccgccatcgtatcggagggagtcaagcccaccctg
tccgagctggagaagtttgaagagcagacggagggcatggacgttgagctggcccccgag
aagtcgacagcaggggaggtcacccactccctggcgtcaggagacatggtggaggtggtg
gagggggagttgattcgtctccagggcaaggtcatcaaggtcgacggcaacaagattacc
ctgctccccaaacacgaagatctcaaggaccccctggagttctcagccaacgaactccag
aagttcttcaagatgggcgaccatgtgaaggtcatcaaaggtcgctacgagggcgacaca
gggctgaccgtgagagtggagcccaacatgatcgtcctgttctctgacctgaccatgcac
gagctgaaagtgcgtccagacgacatccagctgtgtacagacatggcgacgggagtggac
tcccttggacagtttcagttcggagatctggtgcagttggatcctcagaccatgggcgtc
attgtgcgtctggagaaagagaacttccaggtgctcagcatgcagaacagggtggtttct
gtcaagccgcagagcgtgaccagaaagcgtgacactcgacatgccgtggcgctcgactcg
gagaataacaatatccaagtcaaggacatggtcaaggtcatcgatggacctcactccgga
cgcaatgggcagataatgcacctgtaccgcagttttgcgttcctgttgtctcgcatgatg
acagacaacggaggatactttgtgtgccgcaccaggcatctcgtgctggccggcagctca
gggaacgcgtcgctgggcacgatggggggcatggcaccgatgtctccccgcctgtccagc
ccggcccaccccagcagtggagggggtgacgccaagcagggtggtggccgaggtcgtgga
gtggccacccgacgcgaccgagaggtcatcggtcagaccgtgcgcatcaggcagggaccc
ttcaaaggttacattggaattgtcaaggacgctacagaggacacggccagagtggagctg
cattcctcctgcaagaccatctccgtggacaagtcgcgtctctctacgctcaccgggccc
agagctggggcaggcgcaggcggccggacctcaacctacgacggccgcactcccacgtac
ggaggacagactcccatgtacggctcccgcactcccatgtacggctcccagacgccgctt
aacgacgggagtcgcacgccacactacggcggccagacgccactccacgagggcagtcgc
actcccagtggcgcaggaggcagtgcgtgggatccctccaacgccaacactccgtcaagg
atgaacgactttgactacaactacgatgaatcggcctccccggctgactttgccaccacc
cccaacccggccacccctgggtacaccacggacacacccagccccgtggggccctacacc
cctcaaacacccggcagtacctactccccctaccaccacaccgcgccctcccctgccaac
ttccaagctccaagtcctggtggctacaacagccccagcccctccggctatcagccgagc
cctagccccgggacgttcgccggcaccccttcccccagcggtatgggcttcagccccatg
actcctggcgcccccttcacaccccagacacccggcacagcaatggaccacagcctgtcg
gactggcacaccacggaaattgtggtcaggatcaaagaaacacacgacaacaccgagctt
atccatcagactggcgtcgtccgcagcatttctggtggacactgctcagtgtacatcccg
gtggaagacaaggtggtcaacattgcctgcgaacacctggagcctgtgcagcctgaaaaa
cacgacaaggtgaaggtgattctgggtgatgagcgagagacggtgggctccatcatcagt
atcgacggctccgagggcgtcttcaagacggaggacggaaacatccgcatgcttcccatc
aagcacctgtgcaagatgaccggataa
DBGET
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