Littorina saxatilis: 138973116
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Entry
138973116 CDS
T10665
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lsax Littorina saxatilis
Pathway
lsax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138973116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138973116
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138973116
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
138973116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
CNOT1_HEAT
DUF3819
CNOT1_1st
DUF7809
Motif
Other DBs
NCBI-GeneID:
138973116
NCBI-ProteinID:
XP_070201882
LinkDB
All DBs
Position
LG1:complement(50639475..50723852)
Genome browser
AA seq
2545 aa
AA seq
DB search
MNLDSLSFALAEISYSVANLTKKNYKASVAEINHLVLQHGAEADGHLFRCLLSHIDFSGD
GKSSGKDLYQIQYLTTDNSHFLGRPNFISILCNAVDNPLHHQKTLKPSTQLLSQLSKVLK
LNRVQEVVYAFALLHSSNSDSVQYATQFLKQKIPDLIHSYVDADTAVTGRQEGGLQDAGV
EALHLLLSHLLRGRDTYGIGKEQKEALLKTLRRDFPRERVPAILSFLLYPETEDIPVNQL
STLNNMPSSMMDSSLAELLMEAGYGCTSSKDECRSVMVGVRELSPLAVARALGMIARTPV
GLSDQQQTSGWGEKTETPGVTTWNVDIFVQTIRDLSPSLDWKEVVGQLDHQGFLVTGKKG
LRLLVQGLLRGLQLSNESFPVQYIFRPWSNTEGQLSFIIQSLRFYDIFCFADYLVDVVVS
DILKSTPSDDDREVAVWKSLNLVETLLRLSEAGHYQPVLEAFKLPVTKCPDILVLALLQT
TPTWNTLKQELISNLMPIFLGSHPNSAAILHYAWHYQSHSSTIRTLIMHSMAEWYMRGDV
HDQMRLSRILDVAQDLKALSMLLNATPYAFVVDLACLASRREYLKLDKWLTDKIADHKEP
FISACVLFLKRRCPQLVGVGKEEPQAKSQQLPPETVATMLNCLKQFAGYFLSRSHVSQEL
QEAITTMYTNATVYLSKLRVAPNPVGPPGPVGPKPPNFPQGMRMFKMDPMSMAGVMGQQQ
PVSAVGSGAPGPPGPPGGGGFPQSMPPLNPSTPGSPARSFPGMGTQPNGGNPGFNPMPSL
NSQFQSTPPDTGKFLPAFQQTIDAGWNPIGSHFQNMGFQNSSTMNASRTNPINSLASLSI
QAVRPPAPNEQRLGNRAGAVSSGSSGPGPGGGTGPGPGPGGGGGGNPGPPGDMSSLFPEM
QQSFSKEVEDQANSYFQQIYNHPPASNMSIEQVLSMLKKFKDSNNKMEKDVFQCMLRNLF
EEYRFFPQYPDRELQTTAVLFGGIIDQGIVTYWTLGIALRYILDGLRKPHGSKMYLFGIT
ALDRFKNRLKEYPQYCQHVSAIPHFREFPQHIIEFVEYGARSQEPPQPHPDAARSQTPSM
PLGGGGPPLPMNPARSAPMDVGLGHGMGMPTSMAASVSAPPPSIQTPTSSTSQPPPPPPP
STPSAGPPGSTTSGGSRGPAFPKPSIATATNIDTLLAGQGKEEISVPPESLQDKVFFIFN
NLSLANMVQKGEELKDHMGDDYVPWVSQYLVMKRASIEPNFHTLYSSFIDVLKIYQLYNM
VVKETFRNIKVLLRSDKGVANFSDRTLLKNLGHWLGMITLAKNKPILKNQDVDLKALVYE
AYQKGAQELLYVVPFTAKVLESCAKSKVFCVPSPWTMAIMNVLAELHQEPDLKLNLKFEI
EVLCKTLGLDVNDLKPATYLKDPSRMVHLEVQYLSRPQLPPPPQPKESEEQVVIPPPPPS
LGLPFPMNQVPVSMPPPVPLPPMHGGLGVGGAGLPPSMPPPTVPQHQHPYPTFDSINTNI
ATIQQQIQFNEKHPFMQGNMFLIQHVRPTIERTIQDLITPVVDRSIKIALTTCEQIVKKD
FALEPDEGRMRNAAHCMMRNITCGLALITAREPILMQITNNLKSAFSSKFNINNQPPKEM
LDQACSAIAGDVVDVCTAFIQKTAVERAVPEMDKRLANEFELRKVARAENRRYCDPACLT
YQAERMPEQIRMKVGSVTSQQLAVYEEFARNLPGFMQLDYMGGPAKPMHQPPPQQQQQQQ
QQPPPMMPQQMQQQPPPNVPPPPQYAPDEVSLIFERIVRDLEQHLQVISIMPNSPMTAQL
HSLLETAIQTRNAREPRAATILLQKAVEGLLEHYIPSAITSDQQELLLRFRECHLMVLKG
LADARALGPGWAPKEVTRCLIMSGREESKYNLEAVETLIRSGLISQTQFDVYLTSVLETG
SSPAVSFVMQVMQRICSDDKNSPHNFTENDFPQTVDALNTIAARPRQSPEGPNVSLRLEN
LMTNLRVPGGDSVSNSVRNNAATMMQSGISQAREFDDPPGLHEKAEYLLREWVNMYHSPA
AGRDSTKAFTCFVQQQMHQQGILKTDDLITRFFRLCTEMCVDLCYRALSEQSHSPTLVRA
KCFHTLDAFVRLIALLVKHSGDNANTVTKINLLNKVLGIVAGVLLQDHEVRYTDFQQLPY
HRIFIMLFIELNAPEPILEGINYQVLAAFCQAFHILRPSKAPAFAFAWMELISHRVFIGR
LLALTPGQRGWAMYAQLLMDLFKFLAPFLRNADLTKSTQLLYKGTLRVLLVLLHDFPEFL
CDYHYTFCDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDSLPDITQAPRILSNYVN
IIQPASFKKDLDSYLKTRSPITFLSDLKSNLQSTDAGCHYNIQLVNALVLYVGTQAIQYV
NNKSQTPSMNTIAPSTHMDIFQNLAVNLDTEGRYLFLTAISNQLRYPNSHTHYFSCCLLY
LFAQAHTEAVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPSFKFWNHDFVHCAPEIE
KLFESVARSCTLKGNMREPETTEVH
NT seq
7638 nt
NT seq
+upstream
nt +downstream
nt
atgaatctagattcgctttcctttgctctggcagagataagttattcagtggccaatctc
accaagaaaaactacaaagcaagcgtcgctgaaataaatcatctggttttacaacacggg
gcagaagcagacgggcatcttttccggtgccttttgtctcacatcgatttcagcggggat
ggtaaaagttcaggcaaagacttgtaccagatccagtatttaacgactgacaacagtcac
tttctggggaggccgaactttatttccatcctttgcaacgctgttgacaaccccctccat
catcaaaagactctcaaaccttcaacccagctactttcacagttgagcaaagtgttgaag
ctgaaccgcgtgcaagaagtggtttacgctttcgctttgctccattcttccaactccgac
tctgttcagtacgccacccagttcctcaagcagaaaatacctgacttgattcactcctac
gttgatgcagacactgcggtaaccggacgccaggaggggggcctgcaagacgcaggcgtt
gaagctcttcaccttcttctctctcaccttctgcgtggccgcgacacctacggaatcggc
aaggaacaaaaggaagccctactcaagacactccgacgagattttccacgagaacgcgtt
cctgccattctgagctttttattgtaccctgaaactgaagacattcctgtgaaccaactg
agtactctgaacaacatgccttcctccatgatggactcgtctctggctgaactgttgatg
gaagctggctacggctgtacctcaagcaaggatgagtgtcgcagtgtgatggtgggggtg
agggagctgtctcctctggcggtggcacgcgccttgggaatgatagctcgcacccctgtc
ggactcagcgaccagcaacagacaagcggatggggagaaaagacagaaacccctggagtt
acgacttggaacgttgacatctttgttcaaaccatcagggatttgtcgccatcgttggac
tggaaggaggttgtaggtcagcttgaccaccaaggctttctggtcactggcaagaagggc
ctgcgtctcctggtgcaggggctgctcaggggcctccagctttccaatgagtccttcccc
gtccagtacatcttcaggccttggagcaacactgaaggacagctgtcattcatcatacag
tcgctgcgattctacgacatcttttgctttgcggactacctggtggatgtggtggtgtcg
gacatcctcaagtccacacccagtgatgatgaccgcgaggtggctgtctggaaatcgttg
aacttggtggaaacgctgttgcgcctgtcggaggctggtcactaccagcctgtgttggag
gccttcaagctgcccgtgaccaagtgtccagacatcctcgtgctggccctgctgcagacc
actcccacatggaacacactgaagcaggagctcatctccaatctcatgcccatcttcctt
ggcagccaccccaactctgccgccatcttgcactacgcctggcactatcagagtcactcc
agtacgatccgcactctgatcatgcactccatggcagagtggtacatgcggggtgacgtg
cacgaccagatgaggctgtcacgtatcctggatgtagctcaagatctcaaagctctgtcg
atgctcctgaatgcaacaccatacgcctttgtggtggaccttgcctgcctggcttcacgt
cgcgaatacctcaaactggacaaatggctcaccgacaaaattgctgatcacaaggaaccg
ttcatttcagcatgtgtgcttttcctgaaacgtcgctgcccccagctggtgggagtggga
aaagaggagccgcaggccaagagtcagcagctgccccccgagactgtcgccaccatgctt
aactgcctcaaacagtttgctggttatttcctctcccgcagtcacgtgagccaggagctg
caggaagccatcaccaccatgtacaccaacgccactgtctacctgagcaaactgcgcgtg
gctcccaaccctgtggggccccccggtcctgtcggacccaaaccaccaaactttcctcag
ggcatgcgtatgttcaagatggatccgatgagcatggctggagtgatggggcagcaacaa
cccgtctccgctgtgggcagcggggctcccggacccccagggccaccaggaggaggaggg
ttcccgcagagcatgccccccctcaacccatccacgccaggctccccggcacgatccttc
ccagggatgggaacccagcccaacggagggaaccctggcttcaacccaatgccgtcgctg
aactctcagtttcaaagtacccctcctgacacgggtaagtttctcccagctttccagcaa
acaattgatgctgggtggaatcccattggctcacactttcagaacatgggtttccagaac
tcctcaacgatgaacgcctcacgcaccaaccccataaactctctggcctccctcagtatt
caggctgtgcgacctccagcacccaacgagcagcgtcttggcaacagggcaggtgcagtg
agctcaggttcctcaggcccagggccaggaggtggaacagggccaggtccgggccctgga
ggtggaggtggaggaaacccgggtcctcctggggacatgtccagtctcttcccagagatg
cagcagtccttcagcaaagaggttgaggaccaggccaacagctatttccagcagatctac
aaccacccgccagcttccaacatgtccattgaacaggtcctcagcatgctgaagaaattc
aaggactcaaacaacaagatggaaaaggatgtgttccagtgtatgctgaggaatttgttt
gaggagtaccggttcttccctcagtatcctgatcgtgagctacaaacaactgctgtgctt
tttggtggcattattgatcaagggattgtgacatactggacgctgggtatagctctgcgt
tacatcctggacggcctgcgcaaaccacacggcagcaagatgtacctctttggcatcacc
gccttggacaggttcaaaaacaggctgaaagagtatccacagtactgccagcatgtgtcg
gccatcccccacttcagagaattccctcagcatatcattgagtttgttgagtacggtgct
cgctcgcaagaaccaccgcagccgcacccagacgcagctcgcagccagacccccagtatg
cccctggggggaggggggccgcccctgcccatgaatccagcacgaagcgcccctatggat
gtggggttgggacatggtatggggatgcccactagcatggctgcgtctgtgtctgctccc
cctccatctattcagacgccgacttcgtcaacctctcagccccctccccctcctcccccg
tcgaccccgtctgccggcccaccaggcagtaccactagcggggggagcagagggcctgcc
tttcccaagccgtccatcgctacagcgaccaacattgacaccctgctagctggccaaggg
aaggaggagatctctgtgcccccagagtcactacaggacaaggtcttcttcatcttcaac
aacctgtctctggctaacatggttcagaagggtgaggagctgaaggaccacatgggtgac
gactacgttccctgggtgtcgcagtacctggtgatgaagcgtgccagcattgagcccaac
ttccacacactctactccagcttcatcgacgttctcaagatctaccagctctacaacatg
gtggtcaaggagacctttcgcaacatcaaggttctgctgcgcagcgacaaaggagtggcc
aacttttcagatcgcacactgttgaagaacttgggccattggctgggtatgattactctg
gccaagaacaaacccattctcaaaaaccaggacgtagatctgaaggcattggtgtatgaa
gcgtaccagaagggggcacaggaactgctgtatgtggtgcccttcactgcaaaagtcctg
gaatcgtgtgccaaaagcaaggtgttctgtgtgcccagcccctggaccatggccatcatg
aacgtgctggcggagttgcaccaggagcctgacctcaagctcaacctcaagtttgagatc
gaggtgctgtgcaagaccttgggcctggacgtcaacgacctcaagcccgccacctacctc
aaggaccctagtcgcatggtgcacctggaagtgcagtacctgtcacgtccccagctgcca
ccgccaccacagcccaaagaaagtgaagaacaggtggttatccctccgccccctccaagc
cttggcttacctttccccatgaatcaggtgccagtgtccatgccacccccagtgccactg
cctccaatgcacggaggtctgggagtgggaggagccggcctgcccccgtccatgccaccc
cctaccgtcccccagcaccagcacccctaccctaccttcgacagtatcaacaccaacatt
gccaccatacagcagcagatccagttcaacgaaaagcacccgttcatgcagggcaacatg
ttcctgatccaacatgtgcgccccaccatcgagcgcaccattcaggatctcatcaccccg
gtcgttgaccgctccatcaagatcgccctcaccacctgcgaacagatcgtcaaaaaggac
tttgccctggagcctgacgagggacgcatgcgtaacgcagcgcactgcatgatgcgcaac
atcacgtgcggcctggctctcatcactgccagggagcccatccttatgcagatcaccaac
aacctcaagagtgccttctccagcaagttcaatataaacaaccagcctcccaaggagatg
ctggaccaggcttgcagcgccatcgccggtgatgtggtggacgtctgcaccgccttcatc
cagaagacagccgttgagagggcagtgcctgaaatggacaagagactggccaatgagttt
gagcttcgcaaggttgctcgtgctgaaaacaggcgttactgcgaccctgcctgcctgacg
taccaggctgagaggatgccggaacagatccgcatgaaggttggctcagtgaccagtcag
cagcttgcagtgtacgaggagtttgcccgcaacctgcctggcttcatgcagttggactac
atgggaggcccagcaaaacctatgcatcagccacccccgcagcagcagcagcaacagcag
cagcagccccctcccatgatgccccagcagatgcagcagcagcccccacccaacgtgccg
cccccaccccagtacgcgcctgacgaggtgtccctgattttcgagcgcatcgttcgtgac
cttgagcagcacctgcaggtgatctccatcatgcccaacagcccaatgaccgcccagctt
cacagcctgctggagaccgccatccagacacgcaatgcacgcgagcccagggctgccacc
atcctcctgcagaaggcggtggaagggttgctggagcactacatcccgtcagccatcacc
tctgaccagcaggagttgctgctccgcttccgggaatgccatctcatggtcctcaaggga
cttgctgacgctcgcgctcttggccctggctgggcccccaaagaagtcaccagatgcctg
atcatgtcagggcgcgaggagtccaagtacaaccttgaggctgtggagacgctgatacgc
agcgggctgatcagccagacccagtttgacgtctacctgaccagcgtgctggagacgggg
tcctcacccgccgtcagcttcgtcatgcaggtcatgcagcgcatctgttccgacgacaag
aacagtccacacaacttcactgagaatgactttcctcagacggttgatgccttgaacacc
attgctgcacgccccaggcagtctcctgaaggtcccaatgtgtccctcaggctggagaat
ctgatgaccaacctgcgtgtgccggggggcgactctgttagcaacagcgtgcgcaacaac
gccgccaccatgatgcagtctgggatctcgcaggcccgtgagttcgacgaccccccgggg
ctgcacgagaaggcggagtatttgctgcgcgagtgggtcaacatgtaccactccccggcc
gccggtagggacagcaccaaggctttcacctgttttgttcagcagcagatgcatcagcaa
ggcatactgaaaacagacgacctcatcactcgattcttccgcctgtgcacggagatgtgc
gtggacctgtgttaccgcgccctcagcgagcagtcgcactctcccacactggtgcgggcc
aagtgtttccacaccctggatgccttcgtacgtctgatcgctctgctggtgaaacactcc
ggtgacaacgccaacaccgtcaccaagatcaacttgttgaacaaggtgctgggcattgtt
gcgggtgttctgctgcaagaccacgaggtgcgctacacggacttccagcagctgccatat
caccgcatcttcatcatgctcttcatcgagctcaacgcccccgagcccatcctggaaggc
atcaactaccaagtcttggctgctttctgccaagcgtttcacattctgcgcccgtccaag
gccccagcatttgcctttgcctggatggagctgatttcacaccgtgtgttcattggtcgt
cttctggccttgaccccagggcagaggggttgggcgatgtacgctcagctattgatggac
ctgttcaagttcctggctcccttcctgcgcaacgcagacctcaccaagtccacacagctg
ctgtacaagggcactctgcgggtgctgctggtgcttctgcacgacttccccgagtttctg
tgtgactaccactacaccttctgcgacgtcatcccgcccaactgcatccagatgcgcaac
ctgatcctgagcgccttcccgcgcaacatgcggctgcctgaccccttcaccccgaacctg
aaggtggacagcctgccggacatcacacaggctcccaggatcctcagcaactacgtcaac
atcatccagccagcgtccttcaagaaagacctggactcatacctgaagacgcgttctccc
atcactttcctgtctgacctcaagagcaacttgcagtcgacagacgcagggtgccactac
aacatccagctggtgaacgcgctagtgctgtacgtgggaacgcaggccatccagtacgtc
aacaacaagagccagacgcccagcatgaacaccatcgccccctccactcacatggacatc
ttccagaacctggccgtcaacctcgacactgaagggcgctacctgttcctgacggccatc
tccaaccagctgaggtaccccaacagccacacacactacttcagctgttgcctgctctac
ctcttcgctcaggcccacactgaggcggtgcaggaacagatcaccagggtgttgctggaa
cggttgattgtgaacagacctcatccctggggcctcctgatcaccttcatcgagctcatc
aagaacccgtccttcaagttctggaaccatgactttgtccactgcgctcctgagattgaa
aagctgtttgaaagtgtggcccgttcatgcacgctgaagggcaacatgagagagccagaa
accacggaggttcactag
DBGET
integrated database retrieval system
