Littorina saxatilis: 138975486
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Entry
138975486 CDS
T10665
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
lsax Littorina saxatilis
Pathway
lsax03030
DNA replication
lsax03420
Nucleotide excision repair
lsax03430
Mismatch repair
lsax03440
Homologous recombination
lsax03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
138975486
03420 Nucleotide excision repair
138975486
03430 Mismatch repair
138975486
03440 Homologous recombination
138975486
03460 Fanconi anemia pathway
138975486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsax03000
]
138975486
03032 DNA replication proteins [BR:
lsax03032
]
138975486
03400 DNA repair and recombination proteins [BR:
lsax03400
]
138975486
Transcription factors [BR:
lsax03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
138975486
DNA replication proteins [BR:
lsax03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
138975486
DNA repair and recombination proteins [BR:
lsax03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
138975486
MMR (mismatch excision repair)
138975486
DSBR (double strand breaks repair)
HR (homologous recombination)
138975486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
CompInhib_SCIN
Motif
Other DBs
NCBI-GeneID:
138975486
NCBI-ProteinID:
XP_070204287
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All DBs
Position
LG9:complement(17468898..17500431)
Genome browser
AA seq
618 aa
AA seq
DB search
MATLTAGALGKMVKDSPPGLQAVLQVINLKKIAANGANDRYRLLVSDGEATYSHVMLATQ
LNTMMENNEIDALCVIRVNRYLCNTIQQDKRILILLDLEVLRKGSEVKEKIGNPTQLKLD
AAGSAPAPQQDQPPPVQETSCRAAPALARPPLNPARIAGGNNATSPMQSSNSFGAKRPQA
GPGTPGSDRVHKIATLTPYQNRWRIRARVTQKSNIRTWSNSRGEGRLFNVNFLDESGEIR
ATGFNDAVDKFYELLEVNKVYYVSRCSLKTANKQYSNVKNDYEMSFNNDSVIEKCEEEVD
LPCMTFDFVPINEMEKHPAKSIVDVIGVVKVCNDLSTVIGRQSQKEITKRDLQIVDQSGS
AINMTLWGSDAQSFDGSSHPVIAVKGASLSDFGGRSMSVLASSQTIVNPDIREAHMLRGW
YDREGANMDFSTFKSDGMSGGGTSWKTFGQVVQENLGQGEKADWFTTKATLMHLKKDNCM
YQACPTENCNKKLVDQGNGMWRCEKCQREFPNYKWRMILQATLSDFSGHQWVTSFQESAE
TLLGVKADELGDMRQNNEAAFDQVFQQALFKDYVFKLRAKVEVYNEESRLKTVCVAATPV
DYTQYGKHLVEEIQKMGL
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggctacacttactgcgggagcgcttgggaaaatggtgaaggatagcccaccaggtttg
caggctgttcttcaagttattaacttgaaaaagattgcagcaaatggagccaacgaccgc
tacaggctgcttgtttctgacggagaagcaacatattcacatgtgatgctggctacacag
ctgaacaccatgatggagaacaatgaaatcgatgccctctgtgtcatccgagtcaacaga
tacctgtgcaacaccattcagcaagacaagcgtatcctgatccttctcgaccttgaggtg
ctgaggaaggggtcggaggtcaaggagaagatcggaaacccaactcaactgaagctggat
gcggccggcagtgcacctgccccacagcaagaccaaccaccacctgtccaagagacttca
tgccgtgcagcccctgctcttgctcgccctccgctcaaccctgctcgcattgctggaggc
aacaatgccacatcacctatgcagtcgtccaacagtttcggtgccaaaaggccacaagca
gggcccggcaccccaggttctgaccgcgtccacaaaattgccacccttactccctaccaa
aacagatggcgcatcagggcgcgagtcacacagaagagtaacattcgcacctggagcaac
tcgaggggtgaaggtcgtctgttcaacgtcaacttcctggatgagagtggcgagatcagg
gccactggcttcaacgatgctgtcgacaagttttatgaactactcgaagtgaacaaggtg
tattatgtgagtcgctgttcgctgaaaacagccaacaagcagtacagcaacgtgaagaac
gactacgaaatgtccttcaacaacgactcggtcatcgagaaatgtgaagaggaggttgac
cttccttgcatgacctttgactttgtccccatcaatgaaatggagaaacatccggctaaa
tccatcgtggacgtgattggtgtggtgaaagtgtgcaatgacctctccacggtgattgga
cggcagagccagaaggagatcaccaagcgtgacctgcagattgtcgatcagtcaggctcg
gccataaacatgacgctctggggaagcgatgcacagtcctttgacggtagcagtcaccct
gtcattgctgtcaagggtgcgagtctctcagactttggagggcgctctatgtcagtgttg
gcgtcgagtcagactatcgtgaaccccgacatccgcgaagctcacatgttgaggggatgg
tatgaccgtgagggtgccaacatggatttcagcacgttcaagagcgacggaatgtcggga
ggtggcaccagctggaagacgttcggccaggtggtccaagagaacctgggtcagggggaa
aaggccgactggttcaccaccaaggccaccctcatgcacctcaagaaggacaactgcatg
tatcaggcatgtccgactgagaactgcaacaagaagctggtagaccaggggaacggcatg
tggcgctgtgagaagtgccagagagagttccccaactacaagtggcgcatgattctccag
gccacattgtcagacttctcgggtcaccagtgggtcaccagtttccaggagtcggcggag
acactgctgggggtcaaggctgatgagctgggggacatgagacagaataatgaagctgcg
ttcgatcaggtgttccagcaggctttgttcaaagactacgtcttcaaactgcgtgccaag
gtggaggtttacaatgaggaaagccggctgaagacagtgtgtgttgcagccacacctgtg
gactacacgcagtacggcaagcaccttgtggaggagattcagaaaatgggactgtaa
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