Littorina saxatilis: 138976451
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Entry
138976451 CDS
T10665
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
lsax Littorina saxatilis
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsax03041
]
138976451
Enzymes [BR:
lsax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
138976451
Spliceosome [BR:
lsax03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
138976451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
R3H
OB_NTP_bind
DEAD
Ank_2
HA2_N
Ank
Ank_5
AAA_19
FtsK_SpoIIIE
Ank_3
nSTAND3
AAA_23
AAA_29
Ank_4
AAA_22
AAA_11
Flavi_DEAD
AAA_16
ATPase
Motif
Other DBs
NCBI-GeneID:
138976451
NCBI-ProteinID:
XP_070205407
LinkDB
All DBs
Position
LG1:64672780..64709945
Genome browser
AA seq
1677 aa
AA seq
DB search
MAASQPMDAGGRIKADSLESDSPSPTHNRKSSRRNSNQSRPGSANQSRPGSANQNRPGSA
MSGKRGPRRDQDACIGEEVKIGIHLAVERFKFDENRKELEFPSSFTATERAYVHRLVQSM
GFKSKSKGKGANRVLNIYKKEQGTLGWSAGFQLARNSRHQIMALLQRLPLTTRERADLQP
RTQKMSISEVTREFNKTTTGRLNNGVPQVPPRRGESDLNQFRQTLPVYHMGQEVLATING
HQVTLIAGETGSGKTTQVPQMILDDCHSRNQQCRILCTQPRRIAALSIAERVAAERAERI
GQTVGYQIRLESKVSPKTLLTFCTNGVLLRTLMGGTASLNTVTHVIVDEVHERDRFSDFL
LLCLKEALPRFKHLKLVLMSAALNIQLFTAYFNGCPVVKVPGTTFNVEEYFLEDVLKWTN
HSNKIMEKLKKDQKNAVRQQEQLTEWCSRQLTLTETSNTTSDVNTDDGVADLETTEFGEE
KEELGPELKAKLDELLTAVWLTGQDDAFHQIFHLIMSENVSVDYIHSATSVTPLMVAAGR
GFPAVAEQLLALGANPNLRSSNGWTALDWAKRFIQGDVVELLEAHVATLDSSTAENDTTE
DLLLVSPENRELLSLYQQSFDDDKVDISLVTELILKIHTTQPEGAMLIFLPGYDDIVATS
NAISTLGQLDRCKVFVLHSAMQSADQKKVFSNYPRFRKVILATNIAETSITINDVVYVID
CGKVKEKTFCALTQVSSLKSNWISKASALQRKGRAGRCRTGVCYHLFSRARYACMQDYQQ
PEILRLQLHELCLHTKLLSAPTMTIAEFLGRCPQAPPFLILRNAVAYLKQMDALDEWEEL
TELGHHLTDLPVEPRLGKMVLHAVVLKCLDPILTIVCALAYKDPFILPAQPSQRRAANMA
RRKFAAGTFSDHMALLRAFQMWQKARTEGWEKSFCEKNFLSAACMEMVVGMRAQLLGQLR
ASGFVRARGGGDIRDLNTNSENWAVVKAALCAGMFPNLLFVDRKKCDLVTQRESKVRFHQ
GSVLSVAPTSASLNCQSLIMSILQLPCDWLVYEEMTRMERLAMVKCCTLVSPITVVIFAG
RSKLPSDALKVADNTQEGDEGGELGEQSDSEGEEKSEAKKTQLQLDDWLTFSVDSDAAHL
ALQLRQKWHALFLRRMRAPSKPWSQSDEEVVRAVINILTNEEQAVGLQQPAGIGQRPRPM
SAETIMSGGNSHGYTDNYADDYNNRYNQQRRMQASPPKRPFQTFRNSRSNIEDNNLPPQS
AARMPGSSSSTPCPSPSPQSASPARSTGGGSGISSCSSGSVDSNSDPGANSTAPCRYFVM
KCNNQKNLEISQSKGIWATSAANERKINGAFQDGKTVYLIFSVQGSGHFQGYARMTSQIG
REKSPEFSAPGLSGIFSSEWVKRANVPFMATHHLHNQWNENRKVQVSRDGQELEPSVGDA
LLRLWDRYPNYQKRSSPSSGGMKTILKHAQQGKQAAPQQQKQESASPGARQNKPIPKDSG
VKQVQDMRKDSVEKIGADGDGAEVKGFGSGSSASSPISANSPCTVSSGSQESYNPDLDPT
SHLHGHPDPSQGYPPRGFNFQPPVSSTAQIISHGVFPPNLQVAPGFNPMYHVGPMSAAVL
PSQQAMSPRPGLSPVMILQRGSGGSPGQVHPHPGFISQGFGGQAPGAYQGQGSQGQK
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaagccagccgatggatgcaggtggtcgcataaaagctgactcgctggagtcg
gattctccgtcaccaacacacaatcggaaatcgagccgcagaaactccaaccaaagccga
cccggctctgccaatcagagcagaccaggctcagccaaccagaacagacctggctcagcg
atgagtggaaaacgaggtccccgtcgtgaccaggatgcatgtattggagaggaggtgaag
atcggcattcacttagcggtggagcgctttaagtttgatgaaaataggaaagagctcgag
tttccgtcatcgtttacagccacggaaagagcttatgtccacagacttgtccagtccatg
ggtttcaagtctaaaagcaaaggaaaaggtgcaaatcgggtcctgaacatctacaagaaa
gaacagggcacccttggctggtcagctggttttcaactggctcgcaactcacgccaccaa
atcatggcgctgctgcaacggcttcccctcactactcgagagagagccgatcttcagcca
cgcacccagaaaatgtccatcagcgaagtgacacgagagttcaacaagacgacaacgggt
cgactgaacaacggtgtgccacaagtaccacccagacggggagagtcagacctcaaccag
tttcgtcagacactcccagtctatcacatgggacaggaggtacttgccaccatcaacggg
catcaagtcacactcattgctggcgagacgggctctggcaaaaccacacaggttcctcag
atgatcttagatgattgtcactcacgcaatcagcagtgccgcattctctgcacccagcct
cgcagaatcgcagccctcagcattgccgaacgagtggctgctgaaagagcggaaaggatc
ggacagacagtcggctatcaaatccgtctggagagcaaggtgtctccaaaaacgctgttg
acgttctgcacaaatggagttctgctgaggacgctgatgggaggcacagcttcactcaac
actgttacccatgtcattgtggatgaagtccatgagcgtgaccggttcagcgactttctc
ctgttgtgtctgaaggaggccctgcccaggttcaaacacctcaagttggtgctgatgagt
gctgcgctcaacatacagctcttcaccgcctactttaatggctgccctgttgttaaagtt
ccaggaacgacgtttaatgtggaggagtatttcctagaggatgttctcaaatggaccaac
cattctaacaagatcatggaaaaactcaagaaagaccaaaaaaatgctgtcagacagcag
gaacagttgacagagtggtgttcacgacagctgacactgactgaaaccagtaacaccacc
tctgacgtcaacactgacgatggtgtggctgatctggaaaccaccgagtttggtgaagag
aaggaagaactgggcccagagttgaaagccaagctggacgaactgctgaccgctgtgtgg
ctgacgggtcaggacgacgcctttcaccaaatctttcacctcatcatgagtgaaaacgtc
tcagtggactacattcactcggccacaagcgtcacccccctaatggtggcggcaggcagg
ggtttcccggcagtggccgagcagctcctggccttgggagccaaccccaacctgcggtcc
tccaacggctggacagcgctggattgggccaaacgcttcatccagggtgacgtggtcgag
cttttggaggcgcacgtagctaccctggattctagcaccgcagagaacgataccaccgaa
gacttactgcttgtctcccctgaaaatcgggagctactgtcgctgtaccagcaaagtttt
gatgatgacaaagttgacatcagcttggtgacggaactgatccttaagattcacaccacg
caaccagagggagccatgctgatctttctgcctggctacgatgatattgtggccacctcc
aatgctatcagcaccttgggtcaattagacaggtgcaaggtgtttgtgctccactcagcc
atgcagtcagcagaccagaagaaagtcttcagcaactatccacgcttccgcaaagttatc
ctggcaacaaatatagcagagaccagcatcacgattaatgatgttgtgtatgtcatcgac
tgtggaaaagtcaaggagaaaactttctgtgcacttacacaagtgtcgtctctcaagagc
aactggatttcaaaggccagcgcccttcagcgaaaagggagggctggcaggtgcaggaca
ggtgtgtgctatcacctgttcagtcgtgctcgttacgcctgcatgcaggactaccagcag
ccagagatactgagactgcagttgcatgaattgtgtctgcacaccaagctgctctctgca
cccacaatgaccatagctgagttccttggacgttgtccacaggccccacctttcctcatc
ttgcgcaatgctgtggcttacctcaagcaaatggatgcgcttgatgaatgggaggagcta
acagagctgggccatcacctgacagacctgcctgtggagcctcgcctgggcaaaatggtg
ctgcatgctgtggtgctcaaatgtctcgaccccattctcaccattgtctgcgccctcgca
tacaaagatccgttcatcttgccagcccagccatcacagaggcgagcagccaatatggca
cgcaggaagtttgctgctggcacgttcagcgatcatatggcccttctcagggctttccag
atgtggcagaaggccagaactgaaggatgggagaagtctttctgtgagaagaactttctc
tctgctgcctgcatggagatggtggtggggatgagagcacaacttctgggtcagctgaga
gccagtgggtttgtgcgagcgagaggagggggagacatcagggatctcaacaccaactca
gagaactgggcagtggtcaaggcggcgctgtgtgccggaatgtttcccaacctcctgttt
gtcgacaggaagaagtgcgaccttgtcacgcagagagagtcgaaggttcgattccaccaa
gggtctgttctgagtgtggcaccgacctccgctagcctgaactgccaatcgctgatcatg
tccatcctacagctgccctgtgattggctggtgtacgaggagatgacccgcatggagcga
ctggccatggtcaagtgctgcaccctggtgtcgcccatcaccgtcgtcatattcgccgga
cgctccaagctgccgtctgacgctttgaaagtggctgacaacacgcaggagggagatgaa
ggaggggagttaggagaacaaagcgacagtgagggagaggagaagagtgaagccaagaaa
acacagcttcaactggatgactggctgaccttcagtgtggattctgacgctgctcacctt
gcgttacaactgcggcagaagtggcacgccctcttcctgcggcgtatgagagctccgtcc
aagccttggtcacagagtgatgaggaagtggtgcgcgcagtcatcaacattctgaccaat
gaggagcaagccgtagggcttcaacagcccgctggtattgggcaacgacccagacccatg
tctgcggaaaccatcatgtccgggggcaacagtcatggttacacagacaactatgctgac
gactacaacaaccgctacaatcagcagcgtcgcatgcaagcatccccaccaaagcggccc
tttcagacattccgcaacagtcgcagcaacattgaggacaacaacctcccccctcagagt
gcggcgcgcatgccaggcagcagttcctccaccccttgcccctccccctccccccagtcc
gcctcccccgctcgcagcacaggagggggaagtggcatcagcagctgcagcagtggcagt
gttgacagcaacagcgacccgggtgccaacagcacagcgccttgccgctactttgtaatg
aagtgcaacaatcagaagaacctggagatctcgcagagtaagggtatctgggccacctct
gctgctaacgagagaaagatcaacggtgcttttcaggatgggaaaacagtctacctcatt
ttctcagtgcaaggcagtggccattttcagggctatgccagaatgacctcacagattggc
agggaaaagtcacctgaattctctgcccctgggctgagtgggatcttcagtagtgaatgg
gtgaaaagagccaacgtacccttcatggccacccaccatcttcacaaccagtggaacgag
aaccgcaaggtgcaagtcagtcgtgatggacaggaactggaaccgtccgtgggcgacgca
ctcctcaggctgtgggatcgctaccccaactaccagaaacgctcctcgccctcctcaggg
ggcatgaagaccattctcaagcatgcccagcagggaaagcaagcagccccacagcagcag
aagcaggaatcggcttcaccaggggcgaggcagaacaagccaatccctaaagactctggt
gtcaagcaagtgcaagacatgaggaaagacagcgtggagaaaattggagcggatggggat
ggagcggaggtgaaaggatttggaagtggatcttccgccagttcccccataagtgccaac
agcccttgtactgtcagttctggaagtcaggagagctacaaccctgaccttgacccaacc
tctcaccttcacggacaccctgacccatctcaaggttacccgccaagagggttcaacttc
cagcctccagtcagctccactgcccaaataatttcccacggcgtgtttcctccgaacctt
caggtggcaccagggttcaaccccatgtaccacgtggggccaatgagtgcggcggttcta
ccctctcaacaggcaatgtcaccgcgacccgggttgtccccggtgatgatcctccagaga
ggttctgggggctctcctggtcaggtgcacccgcacccagggttcatcagtcaagggttt
ggaggtcaagccccaggggcataccaaggtcaggggtctcaaggacagaagtaa
DBGET
integrated database retrieval system
