Littorina saxatilis: 138979723
Help
Entry
138979723 CDS
T10665
Name
(RefSeq) polyadenylate-binding protein 4-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
lsax Littorina saxatilis
Pathway
lsax03015
mRNA surveillance pathway
lsax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
138979723
09123 Folding, sorting and degradation
03018 RNA degradation
138979723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138979723
03041 Spliceosome [BR:
lsax03041
]
138979723
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
138979723
mRNA cycle factors
Stress granule specific factors
138979723
Spliceosome [BR:
lsax03041
]
Complex C
Other components
Complex C specific factors
138979723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_Nup35
RBD_DEAH11
DUF4523
Motif
Other DBs
NCBI-GeneID:
138979723
NCBI-ProteinID:
XP_070208562
LinkDB
All DBs
Position
LG11:complement(10427762..10445343)
Genome browser
AA seq
658 aa
AA seq
DB search
MNPSATPSYPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMISRRSLGYAYVNF
QQASDACVIAERALDTMNFDCIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAL
FDTFSAFGNILSCKTCGQQIACDENGSKGYGFVHFETEEAARQAIEKVNGMLLNGKKVFV
GRFIPRKERLLLLGDKLRKFNNVYIKNFGDDLDDDKLTELFDPFGKIISAKVMTDAQGKS
RGFGFVSYEETEAAEKAVESVNGMELNGKLIFAGRAQKKSERQAELKERFDKFKVDRVNR
LQGVNLYVKNLDEVVDDDRLYKEFSQFGTITSAKVMTEGGRTKGFGFVCFSCPQEATRAV
TEMNGRIIVSKPLYVALAQRKEDRRAYLASRVNVARQVCEGVQTQQPYSNQMFQPSGAGY
FIPQVPQAQRGFFAPAQMPQVRGQQCWQNQTRASQQHNSPGYQAVTPQGNAPRARGPPSS
QSPLPPRASANARAIMGQPSTNSPGVPPPSQHRATPTAPQPVPPPRTTYKLAPHIRNPPP
SATQTVQYTTVTQQQSTVVVNGNLGEPLTAAMLASAPPQEQKQMLGERLFPLIRRLSPSL
AGKVTGMLLEIDNSELLHMLESHESLKAKVEEAVAVLHAHQAKEVVTTGPGQTPSIQE
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgaacccatcagcgaccccgagttatcccatggcgtctctgtacgtgggagatttgcac
cctgatgtgacggaagccatgctgttcgagaagttctccactgcgggccctgtcctgtct
attcgtgtgtgtcgggacatgatcagccggcgctcgctcggctatgcctatgtcaacttt
caacaggcgtctgacgcgtgtgttatagcggagagagctctggacacgatgaactttgac
tgcatcaagggcaggcctatacgcatcatgtggtcgcagcgagacccgtctctccgcaag
tcgggcgtgggcaacgtcttcataaagaacctggacaagaccatcgacaacaaggccctc
ttcgacaccttctctgcctttggcaacatcctgtcttgtaagacatgtggccaacagatc
gcgtgtgatgaaaatggctccaagggatacggctttgtgcactttgagacggaggaggct
gcaagacaggccattgaaaaagtcaacggcatgctgctgaatggcaagaaagtgttcgtg
ggtcgcttcattccccgcaaggagcgactgttgctgctgggagacaagctgcgcaagttc
aacaacgtctacatcaagaacttcggcgacgacctggacgacgacaagctcacggaactc
ttcgaccccttcggcaagatcatcagcgccaaggtgatgacggatgcccagggcaagtca
cgtggatttggcttcgtcagctatgaggagaccgaggcggcagaaaaggcggtggaatct
gtcaacggcatggagctcaacggaaagctgatcttcgctgggcgggcccagaagaagtcg
gagcggcaggcggagctcaaggaacgcttcgacaagttcaaggtcgaccgcgtcaaccgt
cttcagggcgtcaacctctacgtcaagaacctggacgaggtcgtggacgacgacagactt
tacaaggagttcagccagttcggcaccatcaccagcgctaaggtgatgacggagggggga
cgcaccaagggcttcggcttcgtctgcttcagctgcccccaggaggccacgcgcgccgtg
acggagatgaacgggcgtatcatcgtgtccaagcctctctacgtggccctcgctcagcgc
aaagaggaccgcagagcttacctggcctctagggtcaacgtggcccgacaggtgtgcgaa
ggtgtacagacccaacagccatacagcaaccagatgttccagccgagcggggcgggttac
ttcatcccacaagttcctcaggctcagcgagggttcttcgcccctgcccagatgcctcag
gtccgcggccagcagtgctggcagaaccagaccagggcctcgcagcagcacaactcgcca
ggttaccaggcagtgacccctcaaggcaacgcgcccagggcccgtggtcccccctcctcc
cagtcccccctcccccctcgcgcctctgccaacgcacgtgccatcatgggacagccatcc
accaactcccccggcgtcccccctccctctcagcaccgcgccacccccaccgcaccccag
cctgtccccccgccccgcacgacttacaagctggccccccacatccgtaacccccctcct
tctgccacacagaccgtgcagtataccaccgtcacccagcagcagagcacggtggtggtg
aacggcaaccttggggagcccctgacagccgccatgctggcctccgcgccgccccaggag
cagaagcagatgctgggcgagcgactcttccccctcatccgccgcctgtccccctctctg
gcgggcaaggtcaccggcatgctcctggagatcgacaactccgagctgctccacatgctc
gagtcccacgagtcgctcaaggccaaggtggaggaggcagtggccgtactgcacgcccat
caggccaaggaggtggtgaccacagggcctggacagaccccctccatccaggagtga
DBGET
integrated database retrieval system
