Littorina saxatilis: 138979898
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Entry
138979898 CDS
T10665
Name
(RefSeq) DNA mismatch repair protein Msh6-like isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
lsax Littorina saxatilis
Pathway
lsax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
138979898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsax03400
]
138979898
DNA repair and recombination proteins [BR:
lsax03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
138979898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
PXA
MUM1-like_PWWP
ANAPC16
Dicty_REP
ENTH
Motif
Other DBs
NCBI-GeneID:
138979898
NCBI-ProteinID:
XP_070208762
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All DBs
Position
LG11:17120540..17183100
Genome browser
AA seq
1360 aa
AA seq
DB search
MSKNPKQTPKQGNTLFSYFSKTPVKDKTPQKDKEVLSPRRSPNNKAKTSPKSTKKSSPPV
TPNGCVAVAADFTPGDLVWAKLAGYPWWPSLVCDHPTTKSHFKGGKKPEVHVQFFDTPPS
RAWIKASNVKPFKGSDGAEFQRGGQFYTLNTQIRKGAEEADKAVKLPVEERLKLVAFLQP
SDSEEEDEEDEHVDEMMDLDPDIFDAEMSDDNDDSIKENKAAEEKTTETATPAKSETPSK
KRTRKTRQAAGKPKRRRIMSPDSAEEESGDEFKPSGSEDDEDSASSGVDEDEVSGPESGS
EPDSPVKQKKKASADTKKATPLSSNKKVFTPLSSNKKVFTPVVSSATKSKLSLFSAPEPA
PSGEGGQSESSNFVHNRLDFLKPENIRDANKNTPTDPDYDPRTLYVTQSFLDKQTPGMRQ
WWELKRKHFDTVLFFKMGKFYELFHMDSTTGVEELGLIYMKGEHAHSGFPEIAYSRYADA
LMQKGYKVARIEQTETPDMMADRCREMARPTKFDKVVRREICQVSTQGIRTFSQTDGDVG
DAKPSYLLALCETETQDGVVYGVCFVDTSIGTFHVGQFADDRHCSRLRTVFAHHTPAQIL
YERGRMSQKTMQLIDGYASVLKEALSPGKEFWESSKTLKTLHEESYFKEEGEELQWPEAV
KAMMSDSDSLGLTAAEGCELALRSLGAVVWYLQYCLVDHEVLSMKKFEQYQPLDRAPEKR
DTTTFDTRQRNMVLDGVTLLNLEVTKNASTGGTEGTLIEQLDTCATPFGKRLLKQWVCAP
LCQPASINDRLDAVETLMEMQEVATETTDTLKKMPDLERLLSRIHSLGLSKRATDHPEGR
AVLYEEVTYSKRKIEDFMSALAGFKGAMKIVKKFSQHKADLKSKLLKQTVLLDAETEEGR
FPDISEDLQFFDNAFNHEKARKDGVIMPSKGVDDDYDEAVADTRRIEAQLHDYLDKQKQR
LGCKTIVYWGTAKNRFQMEIPEAALKRVPEEYELMSSKKGAKRYRTKVIDNLLADLVDAE
ERKDSALKDIMRKIFHSFDERYKKWNQAVACLSVLDVLLSLARYSRCSDGLMCRPQLTLP
EDDTTPFLEIREGRHACIGGSLSGSDFIPNDTVIGLKDESEESGSSAASRVVMVTGPNMG
GKSTLMRQTGLIVILAQLGCHVPAETCRLTPVDRIFTRLGASDKIMSGESTFYVELSETA
AILQHATEHSLVLMDELGRGTATYDGTAIAFAVVQELSNTIHCRSLFSTHYHSLVDQFAH
DDNVRTGHMACMVENEEGDDPSQETITFLYKFIHGACPKSYGFNAARLASIPEDIIRCAV
KKAKEFESNVEQLHLFGKMWRGCTADNVKTVLEEARQVCA
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaaccccaaacaaactcccaagcaagggaacaccttgttttcctacttctcc
aagacaccagtcaaagacaaaacaccccaaaaggataaagaagtgctctcgcctcgccga
tctccgaacaacaaggccaagaccagtccaaagtcgaccaagaaaagcagtcctcctgtc
accccaaatggctgtgttgcagttgccgcagacttcactcctggcgaccttgtgtgggcc
aagcttgcagggtacccgtggtggccgagcctggtgtgtgaccaccccaccaccaagtct
cacttcaagggaggcaagaagccagaggtccacgtccagttctttgacacgccaccctcc
cgtgcctggatcaaagccagtaatgtcaagccgttcaaagggtcggacggcgctgagttc
cagagagggggacagttctacacgctcaacacacagattcgcaagggtgcagaagaggcc
gataaagcggtgaaactgccggtcgaggaacgtctgaaacttgtggctttcctccagccg
tcagacagcgaggaggaagatgaggaggacgaacacgtggatgaaatgatggacttggat
ccggacatttttgatgcagagatgtccgacgataatgacgacagcatcaaagaaaacaaa
gctgcagaagaaaagaccacagagacggccacccctgctaaaagcgagacaccctccaag
aaacgcacgcggaagacgagacaggctgcagggaagcccaagagacgcagaatcatgtct
ccagacagtgcagaggaagaatcaggcgatgaattcaagccaagtgggtcagaggatgac
gaggacagcgccagcagcggtgttgatgaagatgaggtctctggaccagaatcagggtcg
gaaccagactccccagtcaagcagaagaagaaggcgagtgcggacaccaagaaagccaca
ccattgtccagcaacaagaaggtgttcacgccgttgtcaagcaacaagaaggtgttcacc
cccgtggtcagctcagccaccaagtccaagctgtcgctcttctctgctcctgaacctgca
ccatctggtgaaggaggtcagtccgagtcttcaaacttcgtccacaacaggctggacttc
ttgaagccggagaatataagggatgccaacaagaatacgccaacagatccagattatgat
ccacgcaccctgtacgtgacacagagtttcctggacaagcaaacgccgggtatgcgccag
tggtgggagctgaagaggaaacactttgacacagtcctcttcttcaagatggggaagttt
tatgaattgttccacatggattctaccaccggtgtggaggaactaggactcatctacatg
aagggagagcatgctcactcaggtttcccggagatcgcgtacagtcgctatgccgacgcc
ctgatgcagaaaggatacaaggtagccaggatcgaacagacggagacgccagatatgatg
gctgacagatgtcgagaaatggcaaggcctaccaagtttgacaaggtggtgaggcgagag
atctgccaggtctcaacacaagggattcgaacgttcagccagacagatggagatgttggc
gacgccaaacccagctacctcctggctctttgtgagacggaaacacaggatggggtggtg
tatggagtttgctttgtggatacatctattggaacattccatgttggccagtttgctgat
gaccgtcactgctctcgcttacgtacagtctttgctcatcacacaccggcacagattctc
tacgagagaggtcgcatgtcacagaagacgatgcaactgattgacggatacgcatcggtt
ttaaaggaagccctcagccctggcaaggaattctgggaaagcagcaagacgctgaaaaca
ctgcatgaggagagttactttaaagaggaaggggaggagcttcagtggcctgaggctgtc
aaagccatgatgtcagatagtgactcccttggcctaacagcagcagaggggtgtgagtta
gcattgaggtcgctgggcgccgttgtgtggtaccttcagtactgcctggtggaccatgaa
gttctgtccatgaagaagtttgaacagtaccagccactagatcgggctccagagaagcga
gacactacaacgttcgacactcgacagagaaacatggtgttggacggagtgacgttgctc
aatctggaggtcaccaagaacgcctccacaggggggactgagggcacgcttattgaacaa
cttgatacctgtgctacaccttttggcaagcgtctgctcaagcagtgggtgtgtgcaccg
ctgtgtcagccagcgtccatcaacgacagactggacgccgtagaaacgctgatggagatg
caggaagtcgccacggaaaccacagacactctgaagaaaatgcctgaccttgagaggctt
ttgagcagaattcacagtctgggtttatccaagcgtgccactgaccacccagagggaagg
gccgtcttgtacgaagaagtcacatacagcaagcgcaagatagaggatttcatgtctgca
ctagctggatttaaaggcgccatgaagattgtgaagaagttctcgcagcacaaggctgac
ctgaagtcaaaactgctgaaacagacagttcttcttgacgcagagacagaagaggggcga
ttccctgacatctctgaagatctgcagttctttgataatgcgtttaatcacgagaaagca
aggaaggatggagtcataatgccgagcaaaggtgttgatgacgactacgatgaagcggtg
gcggacactcggcgcattgaggcacagctacacgattacctggacaaacagaaacagcga
ctgggttgcaagacgattgtgtactggggaacggcgaagaaccgcttccagatggaaata
ccggaggcggcgctgaaacgagttccggaggagtacgaactgatgtcgtccaaaaagggg
gccaagcgttaccgcactaaggtcattgacaacctgctggctgaccttgtggatgcggag
gagcggaaggactcggctctcaaggacatcatgcggaagatcttccacagctttgatgaa
aggtacaagaagtggaaccaggcggtagcgtgtctgtctgtgttggacgttctgctgtcc
ctggctcgttacagtcgctgcagtgacggcctcatgtgtcggccacagctaacactccct
gaagatgacaccacgccgttccttgagattcgtgagggcagacacgcatgtattggcggc
agtctgagtggcagcgacttcattcccaacgacaccgtgattggattgaaagacgagtct
gaggagagcggaagcagcgccgccagtcgtgttgtcatggttacgggacccaacatggga
ggaaagtcgacactgatgcgacagacaggactcatcgttatactggctcagctgggttgc
catgtgccggcagaaacgtgtcgcctgactcctgtcgacagaatattcacgcgtctggga
gccagtgacaaaatcatgtcaggagagagcacgttctatgtggagctgagtgaaacagcg
gccatcttgcagcacgccactgaacactccctggtgcttatggatgaactgggtcgaggc
acagccacctatgacggcacggccatagcgttcgctgtggtgcaggagttgtccaacacg
atccactgccgctccctcttctccacacactatcactccctggtcgaccagttcgcacac
gacgataacgtcaggactgggcacatggcgtgtatggtggagaacgaagaaggggacgac
ccatctcaggagaccatcacctttctctacaagttcatccacggtgcctgtcccaagagc
tatggcttcaacgctgctcgtcttgccagcattcctgaagatatcatccgatgtgctgtg
aagaaggccaaagagtttgaatcgaacgtggaacagctgcacttgtttgggaagatgtgg
agaggatgcacggcagataacgtgaaaacagtattggaggaagcgcgtcaagtctgtgca
tga
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