Littorina saxatilis: 138981895
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Entry
138981895 CDS
T10665
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
lsax Littorina saxatilis
Pathway
lsax03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
138981895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsax03041
]
138981895
Enzymes [BR:
lsax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
138981895
Spliceosome [BR:
lsax03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
138981895
Complex C
U5 SnRNP specific factors
138981895
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DDX23
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
138981895
NCBI-ProteinID:
XP_070211139
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All DBs
Position
LG12:complement(39006520..39045182)
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AA seq
809 aa
AA seq
DB search
MGPGPRSRSRSPVMKSEVRMDDSRRREPRRERSRSRDRVDSRVDRVDRVDRRERSRSRER
RERDGRDDRRDDRGKHKRPRSRERKRSPGKGERRRSPERSQRSDGRDRKRHRSRSPQDDK
GVKHESKEEKKVPLSLEELLAKKKAEEEALSKPKFLTKEQRVAEALRKRQELADSQRQKM
DEERKKQMDFLKASKDSMMDDFDRDRRYRPDRRERDVQREDDKGEKRSEKDQEKEAAAIK
ERYLGIIKKRKRVRRLNDRKFVFDWDAGDDTSLDYNELYKERHGVQFYGRGNVAGIDIKA
QKKDQSKFYGDLLEKRRTDAEKEQEKKRLKNMANKEAKQKWDDRHWADKSKEEMQERDWR
IFREDYNISCKGGRIPNPIRFWKESDIGKDIMDTIDRVGYKEPTPIQMQAIPIGLQNRDI
IGVAETGSGKTAAFLIPLLVWIQSLPKIVRMEDADQGPYAIILAPTRELAQQIEEETHKF
GECLGIRVVSVIGGISREEQGFKLRQGCEIVIATPGRMIDVLENRYLVLNQCTYVVMDEA
DRMINMGFEPEVRKILDYLPVTNQKPDTEDAEDDIKMMENFLSKHKYRQTVMFTATMPPA
VERLARTFLRRPTVVYIGNIGKPVERVEQIVYMLTESEKRKKLVEVLNAGVDPPIIIFVN
QKKGADVLAKSLEKMGYNATTLHGGKGQEQREYALASLKGGTKDIMVATDVAGRGIDIKD
VSLVINYDMARTIEDYTHRVGRTGREGKAGTSITFLTKEDSMVFYDLKQLMVSSPVSTCP
PELANHPDAQQKPGAQPQKKRKDEKVFIN
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgggtccagggcccagatctcgctccagaagccctgtgatgaaaagtgaagtccggatg
gacgattcccgacgcagagaaccacgacgagaacggtcgcgctcgagagacagagtagac
tcccgagtagacagagtggacagagtggataggcgagaacgttctcgatccagagaacga
agagagcgagatggaagagatgatcgccgcgatgaccgcggaaaacacaagcgacccagg
agtcgagaaaggaagaggagtccgggcaaaggggagcgtcgccgaagtcccgagaggtca
caacgcagtgacggcagagaccggaagagacacagatctaggtcaccacaagacgacaag
ggtgtcaagcatgagtccaaggaagaaaagaaagttccactttcactggaagagttgctt
gcaaagaagaaggctgaagaggaagctctgagcaagcctaaattcttaacgaaagagcag
cgagtggccgaggcgctgagaaagagacaggagctggcggactctcaacgacagaaaatg
gacgaagagcgcaagaaacagatggacttcctcaaggccagcaaagattctatgatggat
gactttgatcgagacagacgatatagacctgatcggagagaaagagatgtacagagggaa
gacgacaaaggtgaaaaacgctcagagaaggaccaggaaaaggaagcagcagctatcaag
gaacgttaccttggaatcatcaaaaaacgcaaaagggtgcgtcgtttgaatgatcgcaag
tttgtgtttgattgggacgctggcgatgatacttcactggattacaatgagctctacaag
gaacggcatggggtccagttttatggcagaggaaacgttgccggtatcgacatcaaggct
cagaaaaaagatcaatccaagttctatggagacttgctggaaaaacgcaggacagacgca
gaaaaagaacaggagaagaaacggttgaaaaacatggccaataaggaagccaaacaaaag
tgggacgatcgtcactgggctgataagtctaaggaggagatgcaagagcgtgattggcgt
atcttccgtgaggactacaatatctcttgcaagggaggccgaatcccgaaccccatccgt
ttctggaaagagtcggacattggcaaggacatcatggataccattgacagagtcggctac
aaagaacccacacctattcagatgcaggccatccccattggtctacagaaccgtgacatc
atcggtgttgcggaaactggcagcggtaaaacggccgcttttctcattcctctactggtg
tggatccagtcactgcccaagattgtcagaatggaggatgcagatcaagggccttacgca
atcattcttgcccccactcgtgagctggcacagcagatcgaagaggagacgcacaagttc
ggcgagtgtctgggcatcagggtggtctccgtcatcggaggtatctcccgtgaggagcag
ggcttcaaactgaggcagggttgcgagattgtgattgccacacctggtcgtatgattgac
gtgttggagaaccgttacctggtgctaaaccagtgtacctatgtggtcatggacgaggct
gatcgcatgatcaacatggggttcgaacccgaggtgcgcaagattctggactacctgcct
gtgaccaaccagaaaccagacacggaggatgccgaggatgatatcaagatgatggagaac
ttccttagcaagcacaagtaccgccaaacggtgatgttcacagccaccatgcctccagca
gtggagcgtctggccagaaccttccttcgacgcccaacagtggtctacatcggtaacatc
ggcaagccagtggagcgtgtcgaacagattgtctacatgctcaccgagtccgagaagagg
aagaagcttgtggaggttttgaacgctggggttgatccacccatcatcatcttcgtcaac
cagaagaagggagcagatgtcctcgccaagtcactggagaaaatggggtacaacgccacc
acgctccacggaggcaagggccaggagcagagagagtacgccctggccagtctaaagggc
ggaaccaaagacatcatggtggccactgacgttgctggccgaggtatcgacatcaaggac
gtttctctcgtcatcaactacgacatggcgcgcacaattgaagactacacccatcgtgtg
gggcgaacgggtcgtgagggcaaagcggggacgtccatcacgttcctgaccaaggaggac
agcatggtgttctacgacctcaagcagctgatggtgtccagtccggtgtccacctgtccc
cccgagctggccaaccatcctgacgcgcagcagaagcccggcgcacaaccgcagaaaaag
cgcaaggacgagaaagtgttcatcaactaa
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