Littorina saxatilis: 138983731
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Entry
138983731 CDS
T10665
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lsax Littorina saxatilis
Pathway
lsax03013
Nucleocytoplasmic transport
lsax03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsax00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
138983731
03015 mRNA surveillance pathway
138983731
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsax03019
]
138983731
Enzymes [BR:
lsax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
138983731
5.6.2.5 RNA 5'-3' helicase
138983731
Messenger RNA biogenesis [BR:
lsax03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
138983731
mRNA cycle factors
Common to processing body (P body) and stress granule
138983731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
Helicase_RecD
AAA_16
SRP54
UvrD-helicase
ATPase
AAA_22
PhoH
Motif
Other DBs
NCBI-GeneID:
138983731
NCBI-ProteinID:
XP_070213143
LinkDB
All DBs
Position
LG1:90266930..90303315
Genome browser
AA seq
1111 aa
AA seq
DB search
MSVDAYGPNSQTLTFLETEDGADLLGADTQGSEFEFTDFTLPSQTQSQTQASQIDLQSQS
QVNGPEIPNQNGVDLSINPITQGVGELNFEEEEEDQFYMKDLPKYACAYCGIHDPACVVY
CNTSKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRHPCATLSNLKDMNWDPSQWQPLIQDRQFLSWLVKVPSDQDQMRSRQ
ISAQQINKLEELWKENPDATLEDLQKPGVDEEPAQVLLRYDDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNMSVRWDLGLNKKRIAYFHMPKANDEMKLMHGDELRIRYIGELHKAWSG
VGHVIKIPDNYSDEVAIELKSNAGVPNECTHNFVVDFVWKSTSFDRMQAAMKTFAVDETS
VWGYIYHKLLGHEVEDVVLKCTLPKRFSAPGLPELNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLVKQNSGPALVCAPSNIAVDQLTEKIHKTGLKVVRLCAKSREAIDSPV
SFLALHNQIRSMDSVPELSKLQQLKDETGELSSTDEKRYRALKKQCEKELLQAADVICCT
CVGAGDPRLAKMQFRSVLIDESTQATEPECMIPVILGCRQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAERLRKSLD
FPWPQPDKPMFFYCTNGQEEIASSGTSYLNRTEAANAEKLVTRFLRSGVKPEQIGIITPY
EGQRAYQVQYMQYSGSLNKKLYQEIEVASVDAFQGREKDFIILSCVRSNEHQGIGFLNDP
RRLNVALTRARYGIIIVGNPKVLSKQPLWNHLLTYYKEQKCLVEGPLSNLKESLIQFSKP
RKLINSTNPGGRFMSNTMFDARELLVPGSVYDRGMPYREPVVHTHDQLNFIGPERAYTRT
AMNLPVPVNMFLPQPVPQPFLNQHMPQDVGLQKGMAGNSWNQNRRQKPPRYSKHQQQQPM
QPNHHPSQPSQHSQEVSQGFSQGPLTQGMSMSQAFPMSQPGMSGLSQAELSQDSFMADDF
KSQMDGMLSQDSTYQGDRHFYASQLSQGPFN
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgatgcatatggcccgaattcgcaaacgcttaccttcctggaaacagaggac
ggagccgaccttttgggcgcagatacccaaggttccgagttcgaattcacagacttcacg
cttccttcgcaaactcagtcgcaaactcaggcgtctcagattgatttgcagagtcaaagc
caggtgaatggacctgagatacctaatcagaatggagtggacctttccatcaacccaatc
acgcagggagtgggagagctcaactttgaagaagaagaggaggaccaattttacatgaag
gatctgccaaaatatgcatgcgcatattgtggaatccatgaccctgcttgtgtggtttac
tgtaacacctccaagaaatggttttgcaatggtcgtggcaacacttctgggagccacatt
atcaaccacctggtgcgagccaaagccaaagaggtgacgcttcacaaggatggccccctg
ggagagactgtgctggagtgttacaactgcggctgtcgcaacgtcttcttgctgggcttc
atccccgccaaggccgactctgtggtggtgctgctgtgtcgccatccttgcgccaccctc
tccaacttgaaggacatgaactgggatcccagccaatggcagccgctgattcaggatcgg
cagttcctgtcgtggctggtgaaggtgccgtctgaccaggaccagatgcgtagtcgtcag
atctcggcccagcagatcaacaagctagaggaactgtggaaagaaaatcctgatgccact
ctggaagatcttcagaaaccgggtgttgatgaagagcctgcacaggtgttgctcaggtat
gacgatgcctaccagtaccagaacatcttcggccccctggtgaagctggaggcagactac
gacaagaagctgaaggagtcgcagacccaggacaacatgtctgtgcgctgggacctcggc
ctcaacaagaaacgcattgcatacttccacatgcccaaggctaacgatgagatgaagctg
atgcacggtgatgagctgaggattcgctacataggagagctgcacaaggcatggtctggg
gtgggccacgtcatcaagatccctgacaactacagcgatgaggtggccatagagctgaaa
agcaatgctggggtccccaatgagtgcacccacaattttgttgtcgactttgtctggaag
tcaacttcgtttgacaggatgcaggcggcgatgaagacatttgcggtggatgagacctcg
gtgtggggctacatctaccacaagctgctgggccatgaggtggaggatgtggtgctcaag
tgcacgctgcccaagagattctccgctccgggtctgccagagctcaaccactctcaggtc
tacgccgttaagactgtgctgcagagacccctcagtcttattcagggtcctccaggcaca
ggtaaaacggtgacgtcagccaccattgtgtaccatctggtgaagcagaacagtgggcct
gccttggtctgtgctccttccaacattgctgtggaccagctgactgagaaaatccacaaa
actggactcaaggtggtgcgactgtgcgccaagagtcgtgaagccatcgactcacccgtg
tctttcctggccctgcataaccagattcgcagcatggacagtgtacctgaactgtccaag
ctgcagcagctgaaggatgagacgggagagctgtcctccactgatgagaaacgctacagg
gctctcaagaagcagtgtgagaaggaactgctgcaggcagctgatgtgatctgctgcacg
tgtgtgggcgctggggaccctcgcctggccaagatgcagttccgctctgtgctgatcgat
gagagcacgcaggccacggagccagagtgcatgattcctgtcatcctgggctgtaggcag
ctgatcctggtaggagaccactgccagctgggccccgtggtgatgtgcaagaaggcagcg
cgggcgggactgtcgcagtcgctgtttgagcgtctggtggtcctgggcatccgccccatc
cgtctgcaagtgcagtaccgcatgcaccccgccctctctgccttcccctcaaacatcttc
tacgaggggtcgctgcagaacggtgtcactgctgcggagcgtctacgaaagagtctggac
ttcccttggccccagccagacaaacccatgttcttctattgcaccaacggtcaagaggag
attgctagctctggaacatcctacctgaacagaactgaagcagccaacgcagagaagctg
gtgactcgcttcctgcgctctggagtaaaacctgagcagattggaatcatcactccgtac
gagggccagcgcgcgtaccaggtgcagtacatgcagtactcgggctccctcaacaagaag
ctgtaccaggagattgaggtggccagtgtcgacgctttccaaggccgtgagaaggacttc
atcattctctcctgtgtgcgctccaacgagcatcaaggcatcggcttcctcaacgacccg
cgacgtctcaatgtggctctgacacgagccaggtacggcatcatcatagtgggaaacccc
aaggttctgtccaagcaaccactgtggaaccatctgctgacgtactataaggagcagaag
tgtctggtggaggggccgctcagcaacctgaaggagagtctcatccagttcagcaagcct
cgcaagctcatcaactccaccaacccgggaggacgtttcatgagcaacaccatgtttgac
gcccgtgagctgctggtgcccggcagtgtctatgacagaggcatgccataccgagagcca
gtggtgcacacccacgaccagctcaacttcatcgggccggagcgcgcgtacacccgcacc
gccatgaacctgccggtgcctgtcaacatgttcctgccccagcctgtgccacagcccttc
ctcaaccagcacatgcctcaggatgtggggctgcagaagggaatggcaggcaacagctgg
aaccagaaccggcgccagaaaccgccgcgctacagcaaacaccagcaacagcaacccatg
cagcccaaccaccacccatcccagccctcccagcacagccaggaggtgtctcagggattc
tcccagggcccgctgactcaaggcatgtccatgtctcaggccttccccatgagtcagccc
ggcatgagtggtctctcccaggctgagctctcacaggacagcttcatggcggatgacttc
aagtcacagatggacggcatgctgtcccaggattccacctaccagggcgaccgccatttc
tacgcctcacagctctcacagggccccttcaactag
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