Leptodesmis sichuanensis: KIK02_00660
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Entry
KIK02_00660 CDS
T07779
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lsc
Leptodesmis sichuanensis
Brite
KEGG Orthology (KO) [BR:
lsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lsc03009
]
KIK02_00660 (rlmD)
Enzymes [BR:
lsc01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KIK02_00660 (rlmD)
Ribosome biogenesis [BR:
lsc03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KIK02_00660 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
MTS
TRM5-TYW2_MTfase
PrmA
Methyltransf_11
Methyltransf_15
RrnaAD
DOT1
PCMT
Methyltransf_32
UPF0020
Methyltransf_12
N6_N4_Mtase
Methyltransf_4
TPMT
Motif
Other DBs
NCBI-ProteinID:
UIE38209
LinkDB
All DBs
Position
141051..142445
Genome browser
AA seq
464 aa
AA seq
DB search
MTFVDQPTLEDRTPWQQGELITLEISDLSDSGDGVGRYDQRVVFVPNTVPDDRAIVRLVR
VKPTYGFGKLQELLEPSPHRIRPRCIVADKCGGCQWQQVSYEYQLEVKRNLVVQALERIG
KFPNPPVDPVLASPSSLGYRNKATYPVVRSQTGQVQAGYYQKGSHQLINLNQCPIQDERL
NPLLAQVKQDIQQRGWGIYDEAHHRGKVRHLSLRIGRRTGEMLLTLVVKERNLVGIEAQA
QTWLERYPGLVGVCLNMNSDRTNAIFGPETLCIAGQPLLHETFAGLTFQIRPDTFFQVNT
EAAEALLQVVMEELQLQGQEVLVDAYCGIGTLTLPLAQQVKQAIGLEVQPEAVEQAQLNA
ALNQIENVSFQVGAVEQALPALDIKPDVMILDPPRKGCDSAVLQALLEMQVDRLVYMSCN
PATLARDLKILCESGQYHLHRVQPADFFPQTSHVECVAFLSLIQ
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgacctttgtagaccaacccacccttgaagaccgcactccctggcaacagggcgaactg
atcaccctggaaatttccgacttgagcgacagtggcgatggggtgggccgctatgaccag
cgagttgtctttgtccccaatacggttccggacgatcgtgcgatcgtccgtctagtgcgg
gtgaagccaacctatggctttggcaaattgcaggaactactggagccatctccccatcgg
attcggcctcgctgcattgtggcggataaatgcggtggctgtcagtggcaacaggtaagc
tatgagtatcaactggaggtcaagcgcaatctggtggttcaggctctggagcggattggc
aagtttcctaatcctccggtcgatcccgtgctggcttctccttcatccctgggctatcgc
aataaggcgacctatcctgtggtgcgatcgcaaaccggacaggtgcaggcgggctattac
cagaaaggcagccaccaactgattaatttaaaccagtgtccaattcaggatgaacgattg
aatccgctgctggcccaagtcaagcaagacattcagcaacggggctggggcatttacgac
gaagcccaccaccggggcaaagtacgccatttgagcttgcgaattggtcgccgtacggga
gaaatgctgctgacgctggtggtcaaggagcgaaatctggttggcattgaggcacaggcg
caaacctggctggagcgctatccaggattggttggagtttgtctgaatatgaacagcgat
cgtaccaatgccatcttcggccctgaaactctctgtattgccggacaacccttgttacac
gaaacctttgccggactcacatttcaaattcggcctgacacctttttccaggtgaataca
gaagccgccgaagcgctactccaggtggtcatggaagaactgcagttgcaaggccaggaa
gtactggtggatgcttattgcggcattggtactctgacgctgcccttagcccaacaggtg
aagcaggcgatcggcctggaagtgcagccagaagcggtagaacaggctcaactaaatgca
gccttaaaccagattgaaaatgtcagtttccaggtgggggccgtcgagcaagccttacca
gcactggatataaaaccggatgtgatgattctggatccaccccgcaaaggctgtgattct
gctgtgctgcaagccttactggagatgcaggtcgatcgcctggtttacatgagctgcaat
cccgccaccctcgcccgcgatttgaaaattctgtgtgaatccggccaataccatctgcac
cgtgtacaacctgccgacttcttcccccaaacctcccacgtcgagtgtgtagcgtttctt
agtttgatacagtaa
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