Leptodesmis sichuanensis: KIK02_24100
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Entry
KIK02_24100 CDS
T07779
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lsc
Leptodesmis sichuanensis
Pathway
lsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KIK02_24100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsc03019
]
KIK02_24100
03009 Ribosome biogenesis [BR:
lsc03009
]
KIK02_24100
Enzymes [BR:
lsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KIK02_24100
Messenger RNA biogenesis [BR:
lsc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KIK02_24100
Ribosome biogenesis [BR:
lsc03009
]
Prokaryotic type
rRNA helicases
KIK02_24100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
HEM4
Motif
Other DBs
NCBI-ProteinID:
UIE37947
LinkDB
All DBs
Position
5159016..5160488
Genome browser
AA seq
490 aa
AA seq
DB search
MTLSFHSLGLSETRTRHLEQLGFTTPTPIQAQAIPHLLSGRDVVGQAQTGTGKTAAFSLP
ILERIDIKSNAVQALILTPTRELALQVCQAIRSFIDDRRLKVVTLYGGQAIETQIGRLQR
GAQIVVGTPGRILDLLSRGDLKLNQVNWLVLDEADEMLNMGFIQDVEKILSQAPTERQTA
FFSATMDPSIRKLVTKFLRSPVTVTIEQPKAAPTRINQVAYIIPRGWTKARALLPILELE
DPDSALIFVRTRKSAAELTSQLQAAGHSVDEYHGDLSQTQRERLLLRLRQRQVRWVVATD
IAARGIHVDDLTHVINYDLPDSVENYVHRIGRTGRAGKEGTAISIIHPLDRRKLRDIEHH
IRQRLAIASIPTRAQIEARQLEKLQAQLKEALAGERMASFLPIVAQLSEEYEPHAIAAAA
LQMAYDQTRPSWMRTSQDAADYADEVAPRYDSPRHSSGPKPKPVKRQAKTGNSSQSKTQS
GSEVSSSADR
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgaccctttcttttcacagcttgggcctttctgaaacccgtacccgtcatttagaacaa
cttggttttacaacgccaacgccaattcaagcccaggccattccccacctcctgtctggc
cgggatgtggttggtcaggcccaaactggaacaggtaagaccgcagctttttcgctcccg
attctggaacgtattgatatcaagtcaaatgcggttcaggcattgattctgacccccacg
cgagaattggctctgcaggtttgccaggccattcgtagctttattgacgatcgccgctta
aaagtcgtcactctgtacggtggacaggcgatcgaaactcaaattggtcggttgcaacgg
ggtgcccaaattgttgtgggaacgcccggacggattctggacttactcagccggggagac
ctgaaactgaatcaggtcaactggctggtgctggatgaagccgatgagatgctgaatatg
ggctttattcaggatgtagaaaagatcctgagtcaggctcctacggaacggcaaactgct
ttcttctcggccacgatggatccctcgatccggaagctggtcactaagtttctgcgatcg
cccgtaacagtgacgatcgaacaacccaaagcggctccgacccgaattaatcaagtagcc
tacatcattcccagagggtggacgaaagcccgtgctctgctgccgattctggaactggaa
gatcccgattcagcactgatctttgtgcggactcgtaaatcggcggcggaactgaccagc
caactgcaagccgctggccatagcgtggatgagtatcatggcgacctcagccagacccag
cgggaacggttgttgctgcgcttacgtcagcgccaggtgcgctgggtagtagccactgat
attgccgcccgaggtattcatgtggatgacctgacccatgtgatcaactacgatctaccc
gatagtgtggagaactatgtccatcggattggccgtactggacgggcaggcaaggaagga
acagcgatttcaattattcatcccctcgatcgccgtaaactgcgggatattgagcaccac
atccggcagcgtctggcaatcgcctccattcccacccgtgcccagattgaagctcgtcag
ttagaaaaactgcaggctcaactgaaagaagctctggctggagaacggatggcctccttc
ctgccgatcgtggcccaactgtcggaagagtatgaacctcatgcgatcgcggcggcggcc
ttacagatggcttacgatcaaacccgtccgtcctggatgcgcaccagccaggatgcggca
gattatgcggatgaggtggctccccgatatgactcgcccagacactcctctggccccaaa
ccaaaacctgtaaagcggcaagcgaaaacgggcaattcctcccagagcaagactcagtct
ggcagtgaggtttcatcttcagctgatcgttaa
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