KEGG   Litorilituus sediminis: EMK97_01020
Entry
EMK97_01020       CDS       T05852                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
lsd  Litorilituus sediminis
Pathway
lsd03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lsd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    EMK97_01020 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lsd03400]
    EMK97_01020 (uvrB)
DNA repair and recombination proteins [BR:lsd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     EMK97_01020 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      EMK97_01020 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd Helicase_C UvrB ResIII UVR DEAD AAA_30 AAA_22 HYOU1_C Ish1 DUF87
Other DBs
NCBI-ProteinID: QBG34416
UniProt: A0A4P6P081
LinkDB
Position
230237..232246
AA seq 669 aa
MKSLTLASDYTPSGDQPTAIKQLLDGIESGLAHQTLLGVTGSGKTFTIANVIEKLNRPTM
MLAPNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNEHIEQ
MRLSATKALLERRDVIIIASVSAIYGLGDPDSYLKMMLHISVGDIINQRDILRRLAELQY
TRNDVAFARATYRVRGDVIDIFPAESDRLALRVELFDEEIERISQFDPLTGQVERTLARV
TIYPKTHYATPRDKILAAVESIKIELKDRAQQLKDNNKLVEEQRISQRTQFDIEMMTELG
YCSGIENYSRYLSGREPGEAPPTLFDYLPDDGLLIIDESHVTVPQIGAMYKGDRSRKENL
VQYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPSKYEIEKSSGDIAEQVVRPTGLLDP
EIEVRPVETQVDDLLSEINKRVPLNERVLATTLTKRMAEDLTDYLDEHGIKTRYLHSDVD
TVERMEIIRDFRLGKFDVLIGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNINGKAILYADRITGSMRTAIDETERRRAKQHQYNIDNNIQPKGVIRKITDVMDVDG
YSDAQALDKVAQQTANYQVDAPMLTTKEIDEKIAQLEKDMLAHAQNLEFEQAAAIRDDIA
KLRLAQLSS
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgaagtcattaacattagcctctgattatacgccaagcggcgatcagcccacggccatt
aaacaattgcttgatggtattgagtcaggtttagctcatcaaacgctacttggtgtgact
ggctcaggtaaaacctttactattgctaacgttatcgagaagcttaatcgtcccaccatg
atgttagcgcctaataaaaccttagcagcacagctttatggggaaatgaaagaattcttt
ccaaacaatgctgttgaatattttgtctcttactatgactactaccaacctgaagcctat
gtgccaacaaccgatacctttatagagaaagatgcctcggtaaatgaacacattgagcaa
atgaggttatcggccacgaaagctttattagagcgtcgagatgtgatcattattgcatca
gtatcagcaatttacggtcttggcgaccctgattcttacttgaagatgatgctacacatc
agtgttggcgatattatcaatcagcgtgatattttaaggcgattagcagagttacaatat
acccgtaatgatgtcgcctttgctcgggcaacctatcgagttcgcggtgatgttatcgat
atctttccggctgaatctgaccgcttagcgttacgggtagagctgtttgatgaggagatt
gaacgtatcagccagtttgacccgctaacagggcaagtggaaagaaccttagcgcgtgtg
actatttatcctaaaacgcattatgcaacacccagagataaaatcttagcggcggttgag
tcaattaaaattgaattaaaggacagggcacagcaattaaaagataataacaagttagtt
gaagagcagcgtatcagtcagcgaacacaatttgatattgaaatgatgactgagcttggc
tattgctcaggcattgaaaactattcaaggtatttatcgggaagagagccaggtgaggcg
ccgccaaccttgtttgactatttgcctgatgatggtttattgattattgacgagtcacat
gtcaccgtaccgcaaattggcgctatgtataaaggcgatagatcccgtaaagaaaatcta
gtgcagtacggctttaggcttccttcagcacttgataatagaccaatgaaatttgaagag
ttcgaagcgttagcaccacaaactatttatgtttcagcaacaccgagcaaatatgaaata
gaaaaatcatcaggtgatattgctgagcaagtggttaggcctactggattgttagatcca
gaaattgaagtgcggccagtagaaacacaagttgatgatttactctcagaaattaataag
cgcgtaccgttaaatgaacgtgttcttgccaccacacttactaaacgtatggcagaagat
ttaaccgattatttagatgaacacggcattaaaactcgctacttacattcagatgttgat
acggttgagcgaatggagatcattcgagattttcgtttaggtaagtttgatgtccttatc
ggtattaacttgttgcgcgaaggcttggatatgcctgaagtgtcgcttgtggcgatttta
gatgcagataaggaaggctttttacgttcagagcgttcacttattcaaaccattggccgt
gctgcgcgtaatatcaatggtaaagctattttatatgcagatagaattactggctctatg
cgcacggcgatagatgaaactgagcgtcgtagggctaagcagcatcagtataatattgac
aataatattcagcctaaaggcgttatcagaaaaataacggatgtcatggatgttgatggt
tatagcgatgcacaggcgctagataaagttgcccagcaaacagcgaattatcaagttgat
gcgccaatgctgacaaccaaagaaattgatgaaaaaatagcgcagcttgaaaaggacatg
cttgctcatgcgcaaaacctcgagtttgaacaagctgctgctattcgtgatgatattgct
aagctaagactagcgcaattatcgagttaa

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