Litorilituus sediminis: EMK97_02425
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Entry
EMK97_02425 CDS
T05852
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lsd
Litorilituus sediminis
Pathway
lsd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
EMK97_02425 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsd03400
]
EMK97_02425 (recD)
Enzymes [BR:
lsd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
EMK97_02425 (recD)
DNA repair and recombination proteins [BR:
lsd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
EMK97_02425 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
SH3_13
Viral_helicase1
RecD_N
UvrD-helicase
NAT10_TcmA_helicase
UvrD_C
SLFN-g3_helicase
DEAD
AAA_22
ResIII
nSTAND3
AAA_16
AAA_25
PhoH
DUF87
PIF1
Motif
Other DBs
NCBI-ProteinID:
QBG34677
UniProt:
A0A4P6P5H2
LinkDB
All DBs
Position
complement(516492..518411)
Genome browser
AA seq
639 aa
AA seq
DB search
MKRNSMAELMYHNFAQAKQALSGIEAIDYFFAKDVLVAVNCEEADSVQLFHLCAALTQSL
RQGHVCLPINEVASQQWLAPERGDSVDEQKSFQFESFTELKALITRLNVLPSDNQLIVFD
KDCLYLKRYWLFERELQQQLGERLTAKARYSNVDIKACITELFPVDDKLKSTEVDWQEVA
VANAINKGFAIIAGGPGTGKTYTVTKLLAAIVSLQQKTQQAALKIALIAPTGKAAQRLSE
SIINAKAGFTDLVAAKVLSAIPDEAKTIHRLLGVIPNQPNFKHNENNLLSYDVILIDEVS
MVDLPLMTRLFRALKPSAQVIMLGDADQLPSVSAGSVLADIAPRPHAGYSAANSQYLAQV
CQSYSLSPSLSEAACQRNSMDYLTLLSKSRRFDGAGGIGLLAQAVIAGDVKQSWHLLSEE
HNEQLTFEQGELKQWLMPLVDKYYLPLKQCTDLAQAFALLLKFRILCATRKGAQGVEEIN
NFIDAMMTGKGRQWQQEQHNLYHGKPIMITENDYQLGLYNGDIGIVWQNEDKQLSVYFEQ
SGQGDNAERYKRVMPSRLPSHESVFAMTIHKTQGSEFSHVAMVLPEGAEQSQSQQQLLSR
ELLYTGITRAKTHLSIASDKVTWQRSVLAKVKRHSQLTL
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
ataaagaggaacagcatggctgagttaatgtatcataactttgcccaagcaaagcaggct
ttatcaggcattgaagcgatagattacttttttgctaaagatgtattagtagccgttaat
tgtgaggaagcagatagcgtacagttatttcacctttgtgctgcgctaacacaaagttta
aggcaagggcatgtttgtttgccaattaacgaagttgcgtcgcagcaatggctagctcct
gaaagaggcgatagtgtagatgaacaaaagtcttttcaattcgaatcttttaccgagctt
aaagccttaataacacgccttaatgttttaccaagtgataatcagttgatcgtttttgat
aaagattgcctgtatttgaagcggtattggttatttgagcgtgagctacagcaacagttg
ggcgagcgattaacggcgaaagcacgctatagtaatgtcgatattaaagcatgtattact
gagctttttcctgttgatgacaagctcaaatcaacagaagttgattggcaggaggttgcc
gttgccaatgcaataaataaaggctttgctattattgctggaggacctggaacaggaaaa
acctatactgttactaagctattggcagcgatagtttctttgcagcaaaaaactcagcaa
gccgcattaaaaattgccttaattgcgcccacaggtaaagccgcacagcgtttatcagaa
tcaattattaatgctaaagcaggttttactgacttagtagccgctaaggttttgtcggct
atccctgatgaagcgaaaactatccataggttattgggggtcatacctaatcagcctaac
tttaaacacaatgaaaataacctgctttcatatgatgtgatcttaattgatgaagtctct
atggtggatttacctttaatgacacgtctatttagagcattaaaaccaagcgcacaagtc
attatgttaggtgatgctgatcaactaccatcagtgtcagcaggtagtgtgcttgccgat
attgctcctagaccacatgctggttattcagcggccaatagccaatatttagctcaagtt
tgtcaaagttattcgctttcaccaagcctaagtgaagcagcttgtcagcgcaatagcatg
gactatttgacccttttgagcaaaagtcgccgttttgatggtgctggtggcattggctta
ttagcacaagcggttattgctggtgatgttaagcaaagctggcatttgttaagcgaagaa
cataatgagcaattgacctttgagcagggtgaattaaaacagtggttaatgccattagta
gataaatattatctgccactgaagcaatgtactgatttggcacaagcgtttgctttactg
cttaaatttcgtattttatgcgcaacgcgcaaaggtgcccaaggtgttgaagaaattaac
aactttattgacgctatgatgacggggaaagggaggcaatggcaacaagaacaacataac
ttgtatcacggtaagcctattatgatcaccgaaaatgattatcaattaggcttatataac
ggtgacataggtattgtttggcaaaatgaagataaacagttatcagtttattttgagcaa
tcgggtcaaggtgataatgctgagcgctacaaacgagttatgccttcaaggttacctagc
catgaaagtgtttttgcgatgaccattcataagacgcaaggtagtgagttttctcacgtt
gctatggtgcttcccgagggagctgagcaaagccaaagtcagcaacagctgttatctcga
gagttactttatactggcatcacacgcgctaaaacgcatttatcgattgcaagtgataag
gtgacttggcagcgaagtgttttagccaaagtgaaaaggcattcgcaattaacgctataa
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