Litorilituus sediminis: EMK97_03980
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Entry
EMK97_03980 CDS
T05852
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lsd
Litorilituus sediminis
Pathway
lsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EMK97_03980 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsd03019
]
EMK97_03980 (pnp)
03016 Transfer RNA biogenesis [BR:
lsd03016
]
EMK97_03980 (pnp)
Enzymes [BR:
lsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EMK97_03980 (pnp)
Messenger RNA biogenesis [BR:
lsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EMK97_03980 (pnp)
Transfer RNA biogenesis [BR:
lsd03016
]
Prokaryotic type
tRNA degradation factors
EMK97_03980 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_RRP5
OB_RRP5_4th
aRib
KH-I_KHDC4-BBP
KH_2
KH_SLS1_2
S1_2
DUF3016
Motif
Other DBs
NCBI-ProteinID:
QBG34952
UniProt:
A0A4P6P6A2
LinkDB
All DBs
Position
complement(878939..881059)
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AA seq
706 aa
AA seq
DB search
MLNPITKKFQFGQHTVTLETGAIARQASAAVMASMDDTSVLVSVVAKKEAVEGQDFFPLT
VNYQERTYAAGKIPGSFFKREGRPSEEETLIARLIDRPIRPLFPEGFTNEVQVIITVVSV
NPEISPDIISLLGTSAALAICGAPFNGPVGAARVGYQDGKYLLNPLQSELETSELDLVVS
GTDSAVLMVESEADVLSEEVMLGAVVYGHEQMQAAITAINEFKAEVNNPVWDWTAPEKNT
ALAAKIAELSEEQVNEAYQITEKAVRYERIAEIRNAVVEQLQAEDEELNVQEAKDLFHDL
EKTVVRGRITQGTPRIDGRDPESIRALDVMTGVLPRTHGSAVFTRGETQALVTATLGTQR
DAQRLDTLMGEKTDAFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGIQAVMPTVEE
FPYAVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGTTEGITALQMDIKIEGITQEIMQIALNQAKAARTHILSVMDEA
IAGHREEISEFAPRIHTMKVSQDKIRDIIGKGGATIRQLTEETGTTIEIDDDGTVKIAAT
DGEQAKDAIARITALTAEIEVGSIYEGKVVRIVDFGAFVNVLPGKDGLVHISQISEERVN
NVADVLSEGQEVKVKVLEVDRQGRVRLSIKEAMEKPAEEAAEPAAE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgttaaatccaattactaaaaaatttcaatttggtcagcatactgtaacacttgaaaca
ggtgctattgcgcgtcaagctagcgcggcagttatggcaagcatggacgatactagcgtt
ttagtttctgttgtagctaaaaaagaagcggttgaaggtcaagacttcttcccactaaca
gtaaactatcaagaaagaacttatgctgcgggtaaaattccaggtagcttttttaagcgt
gaaggccgtccttcagaagaagagacattaattgcacgtttaattgaccgtccaattcgt
ccgttattcccagaaggtttcaccaacgaagttcaagtaatcattactgttgtttctgtt
aacccagaaatttcaccagacattatttcgttattaggtacttcagcggcattagctatt
tgtggcgcaccatttaacggccctgtaggtgctgcacgtgtaggttaccaagacggtaaa
tatttacttaacccgttacagtctgagttagaaaccagtgaactagatttagtggtatca
ggtacagattcagcagtattaatggttgaatcagaagcagacgttttatctgaagaagtc
atgttaggtgcggttgtttacggtcatgagcaaatgcaagcggctattacggcaattaac
gaatttaaagcagaagtaaacaacccagtttgggattggactgcacctgagaaaaacaca
gcattagccgctaaaattgctgagctttctgaagagcaagtaaacgaagcttaccaaatt
actgaaaaagcagttcgttatgaacgtattgctgaaatcagaaacgcagtggttgagcag
ttacaagctgaagatgaagagctaaacgttcaagaagcgaaagacttattccacgactta
gaaaaaacagtagtacgtggtcgcattactcaaggtacaccgcgtattgatggtcgtgat
cctgagtctatccgtgcattagatgtcatgacgggtgttctaccaagaactcacggtagt
gcggtatttacacgtggtgaaacacaagcattagtaacagctactttaggtacacagcgt
gatgcacagcgtttagatactttaatgggcgagaaaacagatgcctttatgcttcactac
aatttccctccatactgtgtcggtgaaacaggctttgttggctctcctaagcgtcgtgaa
atcggtcacggacgtttagctaagcgtggtattcaagcggttatgccaacggttgaagaa
ttcccgtatgcagtacgtgtcgtatcagaaatcactgaatctaatggttcatcgtcaatg
gcttctgtttgtggtacttcattagcacttatggatgctggtgtaccaattaaagcatca
gttgctggtattgctatgggtcttgtaaaagaaggtgataactttgttgttctttctgac
attttaggtgatgaagatcacttaggtgatatggactttaaagtagcgggtactactgaa
ggtattactgcactacaaatggatatcaagattgaaggtatcacgcaagaaattatgcaa
attgcgttaaaccaagcaaaagcagcgcgtactcacatcttatctgttatggatgaagcg
attgcaggtcacagagaagaaatctctgagtttgctccgcgcattcacaccatgaaagta
agccaagataagattcgtgacattatcggtaaaggtggtgctactattcgtcagcttact
gaagaaactggtactactattgaaattgatgatgacggcacggttaaaattgcggccact
gatggtgagcaagcaaaagatgccattgctcgcattacagcactaaccgctgaaattgaa
gtaggttcaatttacgaaggtaaagttgtacgtatcgttgactttggtgcgtttgttaat
gtgttacctggtaaagatggtttagttcatatttcacaaatctcagaagagcgcgtcaat
aatgttgctgacgtactttctgaaggtcaagaagtaaaagttaaagtacttgaagtagac
agacaaggtcgtgttcgtttaagtattaaagaagctatggaaaagcctgctgaagaagcg
gccgagccagcagctgaataa
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