Litorilituus sediminis: EMK97_08160
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Entry
EMK97_08160 CDS
T05852
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lsd
Litorilituus sediminis
Pathway
lsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EMK97_08160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsd03019
]
EMK97_08160
03400 DNA repair and recombination proteins [BR:
lsd03400
]
EMK97_08160
Enzymes [BR:
lsd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EMK97_08160
Messenger RNA biogenesis [BR:
lsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EMK97_08160
DNA repair and recombination proteins [BR:
lsd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EMK97_08160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
SWI2_SNF2
Cas3-like_C_2
SNF2-rel_dom
RecQ_Zn_bind
TniB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBG35684
UniProt:
A0A4P6P386
LinkDB
All DBs
Position
complement(1836038..1838020)
Genome browser
AA seq
660 aa
AA seq
DB search
MNLSESLQQYFGFDSFRAGQEQAISQLLQGQSTLAIFPTGSGKSLCYQFTATQLPHLTLV
VSPLIALMKDQLAFLQSKGIAAACLDSSLTPQQSQAVMQSVHAGETKILMVSVERFKNER
FRRFIETVTISMLVVDEAHCISEWGHNFRPDYLKLPQYCQALNIPLVLLLTATATKQVKL
DMAAKFAIQPEHIVQTGFYRANLDLTTLAVAEQDKKALLLAQISKMTQLHGHASGIIYVT
LQQTAEQVAQFLQENGVNACAYHAGFASETRGQIQHDFMSNKSQIIVATIAFGMGIDKSD
IRFVIHYDLPKSIENYSQEIGRAGRDNLPSHCITLANLDGLTTLENFIYADTPEQSSIAY
VLESIESQKNNALWEMQLLALANDSNIKQLPLKTLLVQLELLGIIQAKYSYFADFKIKLL
QPIEQILARFDDNRRDFLVRVFNAVAFKKVWGSLDFTQLLQDTSIERTRVITALEYLQQQ
ELIVLETKAMTDVYAVQVNAIAVQELSKQLHQYFVDKERKEVARIANLIDFFQLKTCLSV
NLACYFDDSSFQQQMTQQSGSYQCCHCSVCRGQTINLTGIKQNLAWPSDEIILSALAKLK
NALADKTHLAISTESYCRFLAGMTSPLFTRNKVRQMDGFGLCQQHAYQDIRDHLAQLLQH
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgaacttatcggaatcgttacaacaatactttggctttgatagctttcgtgcagggcaa
gagcaagcgattagccagctgctgcaagggcaatcgacactggctatatttccaactggc
tcgggtaaatcactgtgctatcagttcactgctacacagttgccgcatttaacgttagtt
gtttccccgctgattgctttgatgaaagatcaattggcatttctgcaaagtaaaggtatt
gccgcggcttgtcttgattcaagtttaacgccgcaacaaagccaagccgttatgcaaagc
gttcatgctggtgaaacgaaaattcttatggtttccgttgagcgttttaagaatgagcgt
tttcgacgttttatcgaaactgtcactatttctatgttagtggtggatgaagcgcactgt
atttctgaatggggtcataactttaggccagactacttaaagctgcctcaatattgccaa
gcattaaatattcctttggtgttactgctaaccgcaacggcaaccaagcaagtaaaatta
gatatggcagcaaagtttgccattcagcctgagcatatagtgcaaactggcttttatcgc
gctaatttagatttgaccacgctcgcggttgctgagcaggataaaaaagcgctattacta
gcgcaaataagcaagatgactcaattacatggtcatgccagtggtattatttacgttacc
ttgcagcaaacggcagagcaggttgcgcagtttttacaagaaaatggcgttaatgcctgt
gcttatcacgctggttttgctagtgaaacacgtgggcaaattcagcatgactttatgagt
aataagagtcagattattgttgccacgattgcttttggtatgggcatagataaaagcgat
attcgctttgttattcattatgatttgcccaaatcaattgaaaattacagccaagaaatc
ggtcgcgcagggcgagataacctgccatcacattgtattaccttggcaaatttagatggc
ttaaccaccttagaaaactttatctatgctgatacgcccgagcaaagcagtatagcctat
gtattagaaagcattgagagccagaaaaataatgctctgtgggagatgcagttactagcg
cttgccaatgacagtaatattaaacagctgccattaaagaccttgctggtacaactggaa
ctactcggtattattcaagcaaaatacagttatttcgctgattttaaaattaagctctta
caacctattgagcaaattttagcgcgttttgatgacaatagacgagattttttagtacga
gttttcaatgccgttgcctttaagaaagtatggggcagtttggattttactcagctatta
caagataccagtatcgagcgcactcgtgtaataaccgcgcttgagtatttgcagcagcaa
gagctaatcgtgctggaaactaaggcgatgactgatgtttatgctgtgcaagtgaatgct
attgcagtgcaagagttaagtaagcagttacaccaatactttgttgataaagagcgtaaa
gaagttgcacgtattgccaacttaattgactttttccagcttaaaacttgccttagcgtt
aatcttgcctgttattttgatgatagctcttttcaacaacagatgacgcagcaatcgggc
agttatcaatgttgtcattgtagtgtttgtcgggggcagactattaacttaacagggatt
aagcaaaacttagcttggcctagtgatgagattattttgtcagcgctagctaagcttaaa
aatgcgcttgctgataaaacccatttagccatcagcacagaaagctattgtcgttttctg
gcaggtatgacatcaccactatttacacgtaataaagtcaggcaaatggatggttttggc
ttatgtcagcaacatgcctatcaagatattcgtgatcatttagctcaattactgcaacac
taa
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