Litorilituus sediminis: EMK97_09825
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Entry
EMK97_09825 CDS
T05852
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lsd
Litorilituus sediminis
Pathway
lsd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EMK97_09825 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsd03021
]
EMK97_09825 (rpoC)
03400 DNA repair and recombination proteins [BR:
lsd03400
]
EMK97_09825 (rpoC)
Enzymes [BR:
lsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EMK97_09825 (rpoC)
Transcription machinery [BR:
lsd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EMK97_09825 (rpoC)
DNA repair and recombination proteins [BR:
lsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EMK97_09825 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QBG35990
UniProt:
A0A4V0ZG42
LinkDB
All DBs
Position
complement(2205272..2209492)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKQQNQTEEFDGIRIGLASPDLVRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTEPGMTTLEKSQILTEEEYLDALEEHGDEFEALM
GAEAVLALLQQIDLDAEVAQMREELPEIGSETKRKKITKRLKLMEAFAQSGNKPEWMIMS
VLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEARGLATTIKAAKKLVEREGAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNVLAPANGEPIIVPSQDVVLGLYYLTRDCVNGLGEGMVFVDTKEAEKAYRTG
VAELHARVKIRITEHIRNEEGELVANTSLRDTTVGRAILWQVCPDGLPYDLIDQPLGKKP
ISKLINHAYRNLGLKETVIFADHIMYTGFHYAMIAGASVGIDDMVIPDAKYTIIEDSEAE
VAEIQAQFEQGLVTAGEKYNKVIDIWSSANEKVSKAMMDNLSKEYIKNRDGEMEEQDSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEHDCGTQDGLLMTPLIEGGDVVEPLRERVL
GRVVCEDVLIPGTEEVLLPRNTLIDEKLCDTLEEHSVDQVKVRSIITCETDFGICAHCYG
RDLARGHMINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNTGTLKL
QNAKFVTNSEGHIVITSRSSELTIIDEMGREKERYKVPYGSVLSKNDGEAVTAGDTIANW
DPHTHPIITEVAGKVQFVDLVDSVTMVRQTDDLTGLSSIVVTDAAQRSAAGKEMRPMVKL
VDAKGNDIMIAGTDIPAQYFLPGNAIVNLEDGADVNIGDALARIPQESSKTRDITGGLPR
VADLFEARKPKLPAILAEKTGVIGFGKETKGKVRLLITQPNGEVYEEMIPKTRQLNVFEG
EQVIKGEVIADGPESPHDILRLRGVAPVANYIVNEVQEVYRLQGVKINDKHIEVIVRQMI
RKCEILDAGDSEFLKGEQVEVARVNIANRELEAQGKQPAEYEMQMMGITKASLATESFIS
AASFQETTRVLTEAAVAGKKDGLRGLKENVIVGRLIPAGTGYAYHQERAKAKAAFDAHED
TTVSADEAEKALTDALNADLLSDEAE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttcttaagcaacaaaatcaaacagaagaattcgatggtatt
cgcatcggattagcttcgccagatttggtacgttcttggtcatttggtgaagttaaaaag
ccagagacaatcaactaccgtacctttaagccagagcgtgatggtttattctgtgctcgt
attttcggcccagtaaaagattacgaatgtctttgtggtaagtacaagcgtttaaagcac
cgtggtgttatctgtgaaaaatgtggcgttgaagttacattaactaaagttcgtcgtgac
cgtatgggtcatatcgaattagcgagtccagtagcgcacatttggttcttaaaatcattg
ccatctcgtatcggtttattactagatatgaccttgcgtgatattgagcgtgtactttac
tttgaatcttatgttgttaccgagccaggtatgacaacattagagaaaagccagattcta
acggaagaagagtatcttgatgcgttagaagagcacggtgatgaatttgaagccctaatg
ggtgcagaagcagtattagctttattacagcagattgatctcgatgcagaagttgcacaa
atgcgtgaagaactacctgaaattggtagtgaaactaagcgtaagaagatcactaaacgt
ttaaaattaatggaagcttttgctcaatcgggtaataagcctgagtggatgattatgtcg
gttctgccgatcctaccaccagatttacgtccattagtacctctagatggcggtcgtttt
gccacatctgacttaaacgatttataccgtcgtgttattaaccgtaataaccgtttaaaa
cgtttattagatctagttgcaccagacattatcgtacgcaacgaaaagcgtatgttacaa
gagtctgttgatgccttattagataacggtcgtcgtggtcgtgctatcactggttctaac
aagcgtccattaaaatcacttgctgatatgatcaaaggtaagcaaggtcgtttccgtcaa
aacttacttggtaagcgtgttgactactcaggccgttctgtaattaccgttggtccaacg
ttacgtttacaccagtgtggtcttcctaagaagatggcactggagttattcaagccattt
atctacggcaagctagaagcacgtggtttagcgacaacaattaaagcggctaagaaatta
gtagaacgtgaaggcgcagaagtatgggatgtattagacgaagtcattcgtgaacatcca
gtaatgcttaaccgtgcaccgacacttcacagattaggtatccaagcatttgaacctgta
ctaattgaaggtaaagcgattcaccttcacccattagtttgtgcggcctataacgctgac
ttcgatggtgaccaaatggcggtacacgtaccgttgacactagaagcgcaattagaagca
cgtacgttaatgatgtctaccaataacgtactagcaccagcaaacggtgaaccaattatc
gtaccatcacaagacgttgtattaggtttatattacctaacacgtgattgtgtgaatggt
ttaggtgaaggcatggtgtttgttgacactaaagaagctgaaaaagcctaccgtaccggt
gttgctgagttgcatgctcgcgttaaaattcgtatcacagagcacattcgtaatgaagaa
ggtgagttagttgctaatacttcattgcgcgatacgactgtgggtcgtgcaattttatgg
caagtttgtcctgacggtttaccgtatgacttaattgatcagccattaggtaaaaaacca
atttctaaattgattaaccacgcttaccgtaacttaggtttaaaagaaacagtaatcttc
gctgaccacattatgtacacaggtttccattacgctatgattgctggtgcatcggttggt
atcgacgatatggttatcccagatgctaagtacactatcattgaagactcagaagctgaa
gttgcagaaattcaagcgcagtttgagcaaggtcttgtaactgctggtgagaagtacaac
aaagtaatcgatatttggtcatcggctaacgaaaaagtttcaaaagctatgatggacaac
ttatcgaaagagtacatcaagaaccgcgatggtgagatggaagagcaagattcattcaac
tctatctttatgatggctgactcgggtgctcgtggtagtgccgctcagatccgtcagcta
gcgggtatgcgtggtctaatggccaagccagatggctcaatcattgaaacgccaattacc
gctaacttccgtgaaggtttgaacgtattacagtacttcatctcaactcacggcgcgcgt
aaaggtcttgccgatacggcacttaagacagctaactcgggttacttaacacgtcgtctt
gtagacgttgcccaagatttagtggttacagagcatgactgtggtacacaagatggtcta
ttaatgacgccattaattgaaggtggtgatgttgttgaaccacttcgtgagcgtgtatta
ggtcgtgtagtttgtgaagacgttttaattccaggtacagaagaagtattacttccgcgt
aacacattaattgatgaaaaattatgtgacaccttagaagagcactctgtagaccaagtt
aaagtacgttcaatcattacctgtgaaactgactttggtatttgtgcacactgttacggt
cgtgacttggcacgtggtcatatgatcaaccaaggtgaagctattggtgttgttgctgct
cagtcaatcggtgagccaggtacacagctaaccatgcgtactttccacattggtggtgcg
gcatctcgtgcgtcagcagagaacagtgtacaagtgaaaaacactggtaccttgaagtta
caaaacgctaagtttgtaactaactctgaaggtcacattgttattacttctcgttcatca
gaattaaccattattgatgaaatgggtcgtgagaaagagcgttataaagtgccttatggc
tctgtattatcgaagaatgacggtgaagctgtaacagcgggtgatacaatcgctaactgg
gacccgcatactcacccaatcatcactgaggtagcaggtaaggttcagtttgtagatcta
gttgatagtgtcactatggttcgccaaacggatgacttaactggtttatcaagcattgtt
gttactgatgcagcacagcgtagtgccgcaggtaaagaaatgcgtcctatggttaaacta
gttgacgctaaaggtaatgacatcatgatcgccggtactgatattccagcacagtacttc
ttaccaggtaacgcgattgttaacctagaagatggcgctgatgttaacattggtgatgca
ttagcacgtattccacaagagtcttctaagactcgcgatattaccggtggtctaccacgt
gttgctgacttatttgaagcgcgtaagcctaaactaccagctatcttagctgagaaaaca
ggtgttattggttttggtaaagaaaccaaaggtaaagttcgcttacttattacgcaacca
aacggtgaagtgtacgaagagatgatccctaaaacacgtcaattaaacgtgttcgaaggt
gagcaagtgattaaaggtgaggttattgccgatggtccagaatctccacatgatatctta
cgtttacgtggtgttgcaccagtagctaactacattgttaacgaagtgcaagaagtttac
cgcttacaaggtgtaaagattaacgataagcacattgaagttatcgttcgtcaaatgatc
cgtaagtgtgaaattctagatgcaggtgattcagagttccttaaaggtgaacaagttgaa
gttgcacgtgtaaatatcgctaaccgtgaattagaagcacaaggtaagcaacctgctgaa
tacgaaatgcaaatgatgggtattactaaagcctcattagcaactgaatcgtttatttca
gcggcgtctttccaagagacaacacgtgtacttactgaagctgctgttgctggtaagaaa
gatggtttacgtggtctgaaagaaaacgtaatcgttggtcgcttaatcccagcaggtacg
ggttatgcgtatcatcaagagcgtgcaaaagcaaaagctgcttttgatgcccatgaagat
actaccgtatcagctgacgaagcagaaaaagcgttaaccgatgctttaaatgcagactta
ctttctgatgaagctgaataa
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