Litorilituus sediminis: EMK97_11100
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Entry
EMK97_11100 CDS
T05852
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lsd
Litorilituus sediminis
Pathway
lsd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EMK97_11100 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsd03021
]
EMK97_11100 (rho)
03019 Messenger RNA biogenesis [BR:
lsd03019
]
EMK97_11100 (rho)
Transcription machinery [BR:
lsd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
EMK97_11100 (rho)
Messenger RNA biogenesis [BR:
lsd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EMK97_11100 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
AAA
FtsK_SpoIIIE
DUF3086
AAA_22
S1CSD-TOTE-2
DUF5662
Mor
Motif
Other DBs
NCBI-ProteinID:
QBG36222
UniProt:
A0A4P6P9E9
LinkDB
All DBs
Position
complement(2484256..2485515)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKEKSISDLVKLAESMKLEHLARSRKQDIIFAILKAHAKKGEDIFGGGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFSMRTGDTIHGKIRPPKDGERYFALLKVNEVN
FDRPDNSRNKILFENLTPIHPTDRLTMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTLLLQNIAQSIAYNHPEAELMVLLIDERPEEVTEMQRLVQGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVIPSSGKILTGGVDANALHRPKRF
FGAARNIEEGGSLTIIATALIETGSKMDEVIYEEFKGTGNMELHLSRKVSEKRVFPAIHI
NRSGTRREELITKPDELQKMWILRKIVHEMDEVGAIEFLIDKLAMTKTNNEFFDSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaactgaaagaaaaatccattagcgacttagttaagctagctgaatca
atgaagttagagcatttagctcgtagtcgtaaacaagatattatttttgccatattaaaa
gcgcacgccaaaaaaggtgaagatatttttggtggcggggtattagaaattttgcaggac
ggctttggtttcttacgttcggctgactcttcttatttagcgggtccagatgatatatat
gtatcaccaagtcaaatccgccgtttcagtatgcgtactggtgataccattcacggtaag
atcagaccaccaaaagatggtgagcgttattttgctttattaaaagtaaatgaagtgaat
tttgatcgtccagataactcacgtaacaagattttatttgaaaacttaacaccaattcac
ccaactgatcgtcttaccatggaacgtggtaatggctctactgaagatattaccgcacgt
gtattagatttagcttctccaattggtaaaggtcagcgtggtttaatcgtagcgccacct
aaagcgggtaaaaccttattattacaaaacatcgcgcaaagtatcgcttataaccaccca
gaagctgagctaatggtgttacttattgatgagcgtccagaagaagtgacagaaatgcaa
cgtctggtacaaggtgaagtagttgcttctacctttgatgaaccagcaagtcgtcacgtg
caagtagctgaaatggttattgaaaaagctaagcgattagttgagcacaaaaaagacgtt
atcatcttacttgactcaattacccgtttagcacgtgcttacaacacggtaattccttca
tcgggtaaaatcttaaccggtggtgttgatgctaacgctttacacagaccaaaacgtttc
tttggtgctgcgcgtaacattgaagaaggcggtagcttaactattatagcgactgcgctt
attgaaactggctctaagatggatgaagttatctacgaagagtttaaaggtacaggtaat
atggaattacacttatctcgtaaagtgtctgagaaacgtgttttccctgcaattcacatt
aaccgtagtggtactcgtcgtgaagaattgattactaagcctgatgagctacaaaaaatg
tggattttacgtaagatcgtgcatgaaatggatgaagttggcgcaattgagttcttaatt
gataagttagccatgaccaagaccaataatgaattctttgattcgatgaaacgtaagtaa
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