Litorilituus sediminis: EMK97_12165
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Entry
EMK97_12165 CDS
T05852
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lsd
Litorilituus sediminis
Pathway
lsd03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EMK97_12165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsd03400
]
EMK97_12165
Enzymes [BR:
lsd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
EMK97_12165
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
EMK97_12165
DNA repair and recombination proteins [BR:
lsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
EMK97_12165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF2201_N
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
QBG36418
UniProt:
A0A4P6P5Y4
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All DBs
Position
2736437..2737252
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AA seq
271 aa
AA seq
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MPELPEVEVCRLGITPHLQQQTVANVIVRNAQLRWPIPAEVSTIVGKTINAIERRAKYLL
LRFDSGTLLLHLGMSGTVRVIDKDTEVAKHDHFDLVLANGKALRLNDPRRFGAVLWLAEH
QDEQGLLTKLGPEPLSDEFAPGYLFDKAKNRKVPIKTFLMNNHVVVGVGNIYANEALFKA
GILPTAPVGTISCQRLDKLTEIIKEVLAAAIKQGGTTLKDFTQADGRPGYFAQSLLVYGR
VGQACTCCQTPLEEIRQANRSSVFCPVCQQP
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccagagttacccgaggtagaagtatgccgtttaggtattacgccacacttacaacaa
caaactgtagctaatgtgattgttcgtaatgcacagttacgttggcctattcctgctgaa
gtcagcactatcgtaggtaaaactattaatgccattgagcgccgtgctaaatacttgtta
ttgcgatttgattcaggaacattattactacatcttggtatgtctggcaccgttcgtgtt
attgataaagatactgaggttgctaagcatgatcattttgatttggttttggcgaatggt
aaggcgctgcgtttaaacgatccacgacgttttggtgcggtactttggttggcagagcat
caagatgagcaagggttattaactaaattaggtcctgagccactatcagatgagtttgct
cccggttatctttttgacaaagctaaaaaccgtaaggtgccgattaaaacctttttaatg
aataatcatgtcgtggttggtgttggtaatatttatgcgaatgaggctttgtttaaagca
ggtattttgcctactgcgccggtgggcactatcagttgtcaacgactggacaagttaact
gagatcattaaagaagtactcgctgctgcgataaagcaaggtggcacaaccttgaaagat
tttactcaagcagatggccgaccaggctatttcgcccagtcgctattggtttatggacgt
gtcgggcaggcctgcacttgttgtcaaacgccactagaggaaatacgacaagccaataga
agctcagttttctgccctgtttgtcaacagccttaa
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