Litorilituus sediminis: EMK97_13730
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Entry
EMK97_13730 CDS
T05852
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lsd
Litorilituus sediminis
Pathway
lsd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lsd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EMK97_13730 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsd03021
]
EMK97_13730 (rpoD)
Transcription machinery [BR:
lsd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EMK97_13730 (rpoD)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF3391
Motif
Other DBs
NCBI-ProteinID:
QBG36703
UniProt:
A0A4P6P5D9
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All DBs
Position
3091326..3093182
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AA seq
618 aa
AA seq
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MDQAPQSRLKELITKGKEQGYLTFAQVNDHLPQDIIDSDQVEDIVRMINDMGIQVFENAP
DTDTLMMSEANTDEDAAEAAAQALATVESEIGRTTDPVRMYMREMGTVELLTRKGEIVIA
KRIEEGIKEVQRSVSEYPPAINYLLEMWDNYEAEEVRLTDIISGFLDPDAEDDDVAAAAT
HVGSELSKEDLADEDDEDVEDDEDGDESEDDEESGPDPELAREKFAALRAAHEHANKIIE
KNGRGHKDSLAAIDTVAEIFKEFRLIPKLFDKLVKNMRSVMDRLRVQERLIMKHCVVGAG
MPKTTFIKIFPGNETSKDWFEAEKAAGHPYSAALAKVEADVERCIFKLNQVEEETFLNVH
GIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQMLQEMGR
EPTPEELAERMVMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDGSGELPVDSAT
SENLKGATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEQLKSFLDGE
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagcccctcaatctagacttaaagagttaataaccaaaggtaaagagcaaggt
tatttaacgtttgcacaagttaacgatcaccttcctcaagacattatcgattctgaccaa
gttgaagacattgtaagaatgatcaacgacatgggtattcaagtatttgaaaatgcacca
gatactgatactttgatgatgagtgaagccaataccgatgaagatgcggctgaagcagcg
gcgcaagcgcttgccacagtagaaagtgaaattggtcgcacaacagacccagttcgtatg
tatatgcgtgaaatgggtacggttgaactacttactcgcaaaggcgaaattgttatcgct
aagcgtattgaagaaggcattaaagaagtacaacgtagtgtttcagaatatccaccagca
attaattatttgttggaaatgtgggataactatgaagctgaagaagtacgtttaactgac
atcatttctggctttttagacccagatgctgaagatgatgatgtagctgcagccgctacc
catgttggctctgagttgtctaaagaagatttagctgacgaagacgatgaagatgtagaa
gacgatgaagatggtgacgaaagtgaggacgacgaggaaagtggtccagatcctgaatta
gcccgtgaaaaatttgccgcgcttcgtgccgcgcacgaacatgctaacaaaatcattgaa
aagaatggtcgtggccacaaagattcattagccgctattgatactgttgctgaaatcttt
aaagaattcagacttatccctaaattattcgataagttagttaaaaatatgcgtagcgtt
atggatagattacgcgtacaagagcgtttaatcatgaagcactgtgttgttggtgctggc
atgccgaaaacgacgtttattaagattttccctggtaatgaaacctcaaaagactggttt
gaagcggaaaaagcagcaggtcatccgtactcagccgctttagctaaagttgaagctgac
gttgagcgttgtatcttcaaattaaaccaagtggaagaagaaactttcttaaatgtacat
ggcattaaagacattaaccgtcgtatgtctattggtgaagctaaggctcgccgtgctaag
aaagaaatggttgaagctaacttacgtttagttatttcaattgccaagaaatacactaac
cgtggtttacaattcttagaccttatccaagaaggtaatattggtctaatgaaagcggta
gataagtttgaatatcgtcgtggttataagttctcaacttatgctacttggtggattcgt
caagcaattactcgttctattgctgaccaagcgcgtactattcgtattccggtacatatg
attgaaactatcaataaattgaatcgtgtttcacgtcaaatgctacaagaaatgggtcgt
gagccgactcctgaagaattagcagagcgcatggtaatgcctgaagataagattcgtaag
gtattaaaaattgccaaagagccaatttcaatggaaacaccaattggcgatgatgaagat
tcgcacttaggtgactttattgaagacggtagtggtgaattaccagtagattcagcaaca
tctgaaaacctaaaaggtgctactcacgaagtattagcgggtttaacagctcgtgaagct
aaagtacttagaatgcgctttggtattgatatgaataccgaccataccttagaagaggtt
ggtaaacagtttgatgtaacccgtgagcgtattcgtcaaattgaagcgaaggcattacgt
aagttacgtcacccttcaagatcagaacagttaaagagcttcttagacggcgagtaa
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