KEGG   Litorilituus sediminis: EMK97_18735
Entry
EMK97_18735       CDS       T05852                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
lsd  Litorilituus sediminis
Pathway
lsd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lsd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EMK97_18735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lsd03019]
    EMK97_18735
Enzymes [BR:lsd01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     EMK97_18735
Messenger RNA biogenesis [BR:lsd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     EMK97_18735
SSDB
Motif
Pfam: DEAD Helicase_C Cas3-like_C_2
Other DBs
NCBI-ProteinID: QBG37621
UniProt: A0A4P6P7J0
LinkDB
Position
4228796..4230115
AA seq 439 aa
MSVDAIGLSAELLKAVKACGYKNLTPIQQQAIPVIKQGHDLLASAQTGTGKTAAFSLPLL
DKIAGKKKAGQEGHTLQALILTPTRELAIQVADNISQYSQHLPIRSAAVYGGGKMAAQEN
KLKQGLDVLVATPGRLLEHLALRNVDLSQVKYLVLDEADRMLDMGFLADIEKLMVNIKHQ
HQTLMFSATFSERVKSLANTLLRTPKTISVAKQNTTSGKVKQAVYWVSEARKRELLSELI
GVNNWQQVLVFAGTKESANILAKELKLDGIKAALCHGDKTQGARNKALEQFVSGQVRVLV
ATDVAARGLDIDNLPYVVNFHLPFLAEDYVHRVGRTGRAGKSGVAISLVSPKDEKFLENI
EQLVGRKFERIIVPGYEFTRNEHEEYQQQAVKCASKNRYRATQEKNQAIAKKQAKKKAVQ
KNKTARANAKYNNKIKKKR
NT seq 1320 nt   +upstreamnt  +downstreamnt
atgagtgtagatgcaataggtttatcggctgaattattaaaggcggttaaagcgtgtggc
tataaaaatcttacgcctatccaacaacaagcaatccctgtaatcaaacaaggtcatgac
ttactcgccagtgcccaaactggtacaggtaagacggctgctttctctctcccgctttta
gataaaattgccggcaaaaagaaagctggtcaagaaggccataccttgcaagcgttaatc
ttaacgccaacgcgagagcttgctattcaagttgctgataatattagccaatatagtcaa
cacttacctattcgaagtgctgcggtttatggcggcggcaaaatggcagcgcaagaaaac
aagttaaagcaagggctggatgttttagttgctacacctggacgtttgttagagcatttg
gctttacgaaatgtcgatctttctcaagtgaaatatctggtattagatgaagcggatcgt
atgcttgatatgggctttttagctgacatagaaaagctcatggtgaatattaaacatcag
catcagaccttgatgttctcagcgactttttctgagcgtgttaaatcactggcaaatact
ttattacgcacgccgaaaacaattagcgtcgccaagcaaaacaccacctcgggtaaagtg
aagcaggcggtgtattgggttagtgaagcaagaaagcgagagttattatctgagctaatt
ggtgttaataactggcagcaagtgttggtatttgccggtactaaggaaagcgccaatatt
ttagcgaaagagctaaaattagacggtattaaagcggctttatgtcatggtgataaaaca
caaggtgctagaaataaagcattagagcagtttgtttctggacaggtacgtgttcttgtt
gcgacagatgttgctgcgcgtggcctagatattgataaccttccttatgttgttaatttt
catttgccgtttttagcggaagattacgttcatcgtgttggtcgtactggtagagcaggt
aagtctggtgttgcgatttcgttagtaagccctaaagatgaaaaattcttagagaatatt
gagcaattagtaggtcgaaagtttgagcgtattatcgttccgggttatgaatttactcgt
aatgagcatgaagaatatcagcaacaagcagttaaatgcgccagtaagaatcgttatcga
gctacacaagaaaaaaatcaagcgatagctaaaaagcaagccaagaagaaggctgtgcaa
aaaaataaaaccgctagagcgaatgctaaatacaacaataaaattaagaagaagcgttaa

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