Leifsonia shinshuensis: F1C12_01430
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Entry
F1C12_01430 CDS
T06806
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lse
Leifsonia shinshuensis
Pathway
lse03030
DNA replication
lse03430
Mismatch repair
lse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F1C12_01430 (dnaE)
03430 Mismatch repair
F1C12_01430 (dnaE)
03440 Homologous recombination
F1C12_01430 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lse03032
]
F1C12_01430 (dnaE)
03400 DNA repair and recombination proteins [BR:
lse03400
]
F1C12_01430 (dnaE)
Enzymes [BR:
lse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
F1C12_01430 (dnaE)
DNA replication proteins [BR:
lse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
F1C12_01430 (dnaE)
DNA repair and recombination proteins [BR:
lse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
F1C12_01430 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
Motif
Other DBs
NCBI-ProteinID:
QNE33934
UniProt:
A0A7G6Y619
LinkDB
All DBs
Position
285778..289296
Genome browser
AA seq
1172 aa
AA seq
DB search
MPTDSFVHLHVHSEYSMLDGAARVKPLIEAAVEQGMPAVAITDHGNMFGAFDFWRTATDA
GIKPIIGTEAYLTPRTHRTDKTRVRWGDGGGDDVSGSGAYTHMTMLAATTEGMHNLFRLS
SYASTEGYYFKPRMDRELLQRYSKGIIATTGCPSGEVQTRLRLGQYEEAKKAAAEFRDIF
GPENFFAEIMDHGLGIERRIMSDLIRLAKELGLPLVATNDLHYTHAADAKSHAALLCVQS
GSTLDDPNRFKFDADEFYLKTPEEMRQLFRDHPDACDNTLAIAERVDVKFDTAANYMPRF
PVPDGETEQSWFVKEVEKGLHERYPGGITEDVRKQADYEIGVISQMGFPGYFLVVADFIN
WSKNNGIRVGPGRGSGAGSMAAYAMRITDLDPLRHGLIFERFLNPDRVSMPDFDVDFDDR
RRGEVIKYVTEKYGSERVAQIVTYGTIKAKQALKDSGRVLGFPFSMGEKLTKAMPPPVMG
KDIPLTGIFDKEHPRFKEAVDIRAVVESDPEAKTVFDTALGLENLKRQWGVHAAGVIMSS
DPLIDVIPIMKREQDGQIVTQFDYPACESLGLIKMDFLGLRNLTIINDALDNIRDNRGEN
LVLEELELDDRGAYELLSRGDTLGVFQLDGGPMRSLLRLMKPDNFEDISALIALYRPGPM
GANSHTNYALRKNNLQDITPIHPELAEPLEDILSTSYGLIIYQEQVMAIAQKVAGFSLGQ
ADILRRAMGKKKKSELDKQFEGFSQGMVDRGYSMAAVGKLWEILLPFSDYAFNKAHSAAY
GVISYWTAYLKAHYPAEYMAALLTSVGDSKDKMALYLNECRRMGIKVLPPDVNESNLYFA
AVGQDIRFGMGAVRNVGANVVDGVRSAREAKGRFESFHDFLSKVPIHAANKRTVESLIKA
GAFDSLGHTRRALVEVHEDAVESAVKIKRSEANGDVGFDFDSLWGDDEPNQSQHHIPERP
EWVKRDKLAFEREMLGLYVSDHPLAGLELQLAKLASTSIAELLASDNVQDGDTVVIAGLV
TSVQHRVAKASGNQYGMIQVEDFGGEMTVMFMGKAYTEFSPMMQGDSIVVVRGRVSMRDD
GMNLHAFSLMVPDLGQADDIGTLMITMADQRATTDTVSSLAEVLSRHPGDSEVRLRLVKG
QVARVFEVPKPVKVSPDLYGELKGLLGPNCLV
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
gtgccgaccgactccttcgtccacctccacgtccacagcgagtactcgatgctcgacggg
gccgcacgcgtcaagccgctcatcgaggcggccgtcgagcagggcatgcccgccgtcgcc
atcaccgaccacggcaacatgttcggcgccttcgacttctggcgcacggcgacggacgcg
ggcatcaagccgatcatcggcacagaggcctacctgaccccgcgcacccaccgcaccgac
aagacccgcgtgcgctggggcgacggcggcggcgacgacgtgtcgggctccggcgcctac
acgcacatgacgatgctcgcggcgacgaccgagggcatgcacaacctcttccggctgtcg
tcgtacgcctccaccgagggctactacttcaagccgcgcatggaccgcgagctgctgcag
cgctactccaagggcatcatcgcgaccaccggctgcccgtccggcgaggtgcagacccgg
ctgcggctcggccagtacgaggaggccaagaaggccgcggcggagttccgcgacatcttc
gggccggagaacttcttcgccgagatcatggaccacggcctcggcatcgagcgccgcatc
atgagcgacctgatccggctcgccaaggagctcggcctcccgctcgtggcgaccaacgac
ctccactacacgcacgcggccgacgccaagagccacgcggcgctgctgtgcgtgcagtcc
ggctcgacgctcgacgaccccaaccggttcaagttcgacgccgacgagttctacctcaag
acgccggaggagatgcggcagctgttccgcgaccacccggacgcgtgcgacaacacgctc
gcgatcgccgagcgcgtggacgtgaagttcgacaccgcggccaactacatgccgcgcttc
ccggtgcccgacggcgagaccgagcagagctggttcgtcaaggaggtcgagaagggcctc
cacgagcgctacccgggcggcatcaccgaggacgtgcgcaagcaggccgactacgagatc
ggcgtcatctcgcagatgggcttccccggctacttcctcgtcgtcgccgacttcatcaac
tggtcgaagaacaacggcatccgggtcggcccgggccgcggctccggcgccggctcgatg
gccgcctacgccatgcggatcaccgacctcgacccgctgcggcacggcctgatcttcgag
cgcttcctcaaccccgaccgcgtctcgatgcccgacttcgacgtcgacttcgacgaccgc
cgccgcggcgaggtcatcaagtacgtgaccgagaagtacggctcggagcgcgtcgcgcag
atcgtcacctacggaaccatcaaggccaagcaggcgctgaaggactccggccgggtgctc
ggcttcccgttctcgatgggagagaagctgaccaaggcgatgccgccgcccgtgatgggc
aaggacatcccgctgacgggcatcttcgacaaggagcacccgcgcttcaaggaggccgtc
gacatccgcgcggtcgtggagagcgacccggaggccaagaccgtcttcgacaccgcgctc
gggctcgagaacctgaagcgccagtggggcgtgcacgcggcgggcgtcatcatgtcgtcc
gacccgctgatcgacgtcatcccgatcatgaagcgcgaacaggacggccagatcgtcacg
cagttcgactatccggcctgcgagtcgctcggcctgatcaagatggacttcctgggcttg
cgcaacctgacgatcatcaacgacgcgctcgacaacatccgcgacaaccgcggcgagaac
ctggtgctcgaagagttggagctggacgaccgcggcgcgtacgagctgctgtcccgcggc
gacacgctgggcgtgttccagctcgacggcggcccgatgcgctcgctgctgcgcctgatg
aagccggacaacttcgaggacatctcggcgctcatcgcgctgtaccggccgggcccgatg
ggtgcgaactcgcacaccaactacgcgctgcgcaagaacaacctccaggacatcacgccg
atccacccggagctggcggagccgctggaggacatcctctcgaccagctacggcctgatc
atctatcaggagcaggtcatggccatcgcgcagaaggtcgccgggttctcgctcggacag
gccgacatcctgcgccgcgcgatgggcaagaagaagaagtccgagctggacaagcagttc
gagggcttctcgcagggcatggtcgaccgcggctactcgatggcggccgtcggcaagctg
tgggagatcctgctgccgttctcggactacgcgttcaacaaagcgcactcggcggcctac
ggcgtcatctcgtactggacggcctacctcaaggcgcactacccggccgagtacatggcg
gcgctgctgacgagcgtcggcgactccaaggacaagatggcgctctacctgaacgagtgc
cggcgcatgggcatcaaggtgctgccgccggatgtcaacgagtcgaacctctacttcgcc
gcggtcggccaggacatccgcttcggcatgggcgcggtgcgcaacgtcggcgccaacgtc
gtggacggcgtgcggtcggcccgcgaggccaagggccggttcgagtcgttccacgacttc
ctgagcaaggtcccgatccacgcggccaacaagcgcacggtcgagtccctgatcaaggcg
ggcgcgttcgactcgctcgggcacaccaggcgcgcgctcgtggaggtgcacgaggacgcg
gtggagtccgcggtcaagatcaagcgcagcgaggcgaacggcgacgtcggcttcgacttc
gacagcctgtggggcgacgacgagccgaaccagtcgcagcaccacatcccggagcgcccc
gagtgggtcaagcgcgacaagctggcgttcgagcgcgagatgctcgggctctacgtttcc
gaccacccgctggccggcctggagctgcagctcgccaagctcgcgagcacgtcgatcgcc
gagctgctggcctccgacaacgtgcaggacggcgacaccgtggtgatcgcgggcctcgtg
acgagcgtccagcaccgcgtggcgaaggcctccggcaaccagtacggcatgatccaggtc
gaggacttcggcggcgagatgaccgtcatgttcatgggcaaggcgtacaccgagttctcg
ccgatgatgcagggcgactcgatcgtcgtcgtccgcggccgcgtcagcatgcgcgacgac
gggatgaacctgcacgcgttcagcctgatggtgcccgacctcggccaggccgacgacatc
ggcacgctcatgatcacgatggccgaccagcgcgcgacgaccgacacggtctcctcgctc
gcggaggtgctgtcgcggcaccccggcgacagcgaggtgcgcctccggctcgtcaagggc
caggtcgcgcgcgtgttcgaggtgccgaaacccgtgaaagtctccccggacctctacggc
gagctgaaggggctgctcgggccgaactgcctggtgtag
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