Leifsonia shinshuensis: F1C12_01890
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Entry
F1C12_01890 CDS
T06806
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
lse
Leifsonia shinshuensis
Brite
KEGG Orthology (KO) [BR:
lse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lse03016
]
F1C12_01890
Enzymes [BR:
lse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
F1C12_01890
Transfer RNA biogenesis [BR:
lse03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
F1C12_01890
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
QNE34015
UniProt:
A0A7G6Y6A0
LinkDB
All DBs
Position
complement(391560..392756)
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AA seq
398 aa
AA seq
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MADHIVIDSRDAYREALDLIVAGEGPIAVDAERASGFRYSQRAYLIQMFRRGSGTFLFDP
PAIGRFDELNEAIAGDEWVLHAATQDLTCLREVGLDPVSIFDTELAARLLGMPRVGLGTV
VEELLGIHLAKEHSAADWSTRPLPEPWLDYAALDVELLPDLRDAIAGLLVEAGKTDIARQ
EFADELTRELVVPRHEPWRRLSGIHSIRGLRNLAVARELWLSRDALAQQLDVAPGRLVPD
ASLTAAAKAMPDSKRALAAMREFTGRASRTELDRWWGAIEAGRSTDDLPVLRGTGESLPP
PRAWADRNPEADARLKAARAALTTLAEELSLPLENLLTPDTLRRVAWTPPAEVTPSTVAD
ALAKHGARRWQIEATSQAIAQAFVESTQTPRDASEAAS
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaccatatcgtcatcgacagccgcgacgcctaccgcgaggccctggacctgatc
gtcgcgggcgaaggccccatcgccgtcgacgccgagcgcgccagcggcttccgctactcg
cagcgcgcctacctcatccagatgttccggcgcgggtcgggcaccttcctgttcgacccg
cccgcgatcggccggttcgacgagctcaacgaggcgatcgccggcgatgagtgggtgctg
cacgccgccacccaggacctcacctgcctgcgcgaggtcggcctcgacccggtcagcatc
ttcgacaccgagctggcagcgcgcctgctcgggatgccgcgcgtcgggctcgggaccgtc
gtggaggagctgctcggcatccacctcgcgaaggagcacagcgccgccgactggtcgacg
cgcccgctgcccgagccgtggctggactacgccgcgctggacgtcgagctgctgcccgac
ctccgggacgcgatcgccgggctgctcgtggaggccggcaagaccgacatcgcccggcag
gagttcgccgacgagctcacccgcgagctcgtcgtcccgcggcacgagccgtggcggcgc
ctctccggcatccattcgatccgcggcctgcgcaacctcgcggtcgcccgcgagctgtgg
ctgagccgcgacgcgctcgcccagcagctcgacgtcgcgcccggccggctggtccccgac
gcctcgctgaccgccgccgccaaggcgatgcccgactccaaacgcgccctcgccgccatg
cgcgagttcaccggccgcgccagccgcaccgagctggaccgctggtggggcgccatcgag
gccggccgcagcaccgacgacctccccgtgctgcgcggcaccggggagagcctccctccg
ccccgcgcctgggccgaccgcaacccggaggccgacgcccggctgaaggccgcccgcgcc
gctctgaccaccctcgccgaggagctctcgctgccgttggagaacctgctgacgcccgac
acgctgcggcgcgtggcctggacgccgcccgccgaggtcaccccgtcgaccgtcgccgac
gccctcgcgaagcacggcgcgcgacgctggcagattgaggcaacctcacaggcgatcgcc
caggcctttgtggaaagcacccaaacgccgcgcgacgcgtccgaagccgcttcgtag
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