Leifsonia shinshuensis: F1C12_04000
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Entry
F1C12_04000 CDS
T06806
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lse
Leifsonia shinshuensis
Pathway
lse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1C12_04000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lse03019
]
F1C12_04000
03009 Ribosome biogenesis [BR:
lse03009
]
F1C12_04000
Enzymes [BR:
lse01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F1C12_04000
Messenger RNA biogenesis [BR:
lse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F1C12_04000
Ribosome biogenesis [BR:
lse03009
]
Prokaryotic type
rRNA processing factors
F1C12_04000
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Ddi2_HDD
S1
Motif
Other DBs
NCBI-ProteinID:
QNE34379
UniProt:
A0A7G6Y7B4
LinkDB
All DBs
Position
complement(830828..833410)
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AA seq
860 aa
AA seq
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MVENENIDSTNSNEQGTGGRRRRGIFGSRRVSRPAGTAETPVFAGEREIAEQEVVAEQAD
TSVAEATADAGTPDAATDVTVAVTEETAAAESVVDVATIAADGHEPPALPERHGDEQEAA
GAVIPGLPPTTLLFQAPDIVPLPPLPDEEPTGTMRRRSRRRAGENGRTEANDPANTVVKV
RTPREPELITEPQKVKGSTRLEAKKQRRRDGRDAGRRRPVITEAEFLARRESVDRQMVVR
SKGGRIQIGVLEDKVLVEHYVARSQEASLIGNVYLGRVQNVLPSMEAAFVDIGRGRNAVL
YSGEVDWDAVETGNQPRRIELALKAGDRVLVQVTKDPVGHKGARLTSQISLPGRYLVYVP
NGSMNGISRKLPDTERSRLKKILKEVLPESAGVIVRTAAEGATEEQLTLDVTRLTAQWAD
ISRQVETQQAPALLHSEPDLLIKIIRDVFNEDFQKLIIAGDDARQTIESYLRQVAPDLID
RVEAYTGDRDAFDEHRITEQIEKALERKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGG
NLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLIECLSRDRTK
HQVAEVTSLGLVQMTRKKLGLGLLETFSEACEVCAGRGVIVHHDPVVKHRQPQQQPQSER
RRGRGGNAGNGNGNGGGQQQQASAAHTNGTHALTDDAKNALAQIAASTIHPHHEGEVAPA
AEPATQPAQVADAPAADAAPKKRRRKGKGPRDEQRQAEAPAAEAPAAETKPEPAAQESAP
AAPAADEHPHLDFPMIDLPEPSAPVAHAPVATAVETELLLDSVLDALPQPKAPGQGRSRG
RRASTAVITGGQIAGEKHED
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggtggaaaacgagaatatcgacagcacgaacagcaacgaacagggaacgggaggccgc
aggcgccgggggatcttcggcagcaggcgcgtgagccgtcccgccgggaccgccgagaca
ccggtgttcgccggagagcgcgagatcgccgagcaggaggtcgtcgcggagcaggccgac
acgtcggtcgccgaggcgaccgccgacgccgggacccccgacgccgcgaccgacgtgacg
gtcgccgtcaccgaggagaccgcggccgcggagtccgtcgtggacgttgcgacgatcgcc
gccgacggccacgagccgcccgccctgcccgagcgccacggcgacgagcaggaggcggcc
ggcgccgtcatccccggcctcccgccgacgaccctgctcttccaggccccggacatcgtt
ccgctgcccccgctgccggacgaggagccgaccggcaccatgcgccgccgctcgcgccgc
cgcgcgggcgagaacggccgcaccgaggcgaacgacccggcgaacaccgtcgtcaaggtc
cgcacgccgcgcgagccggagctgatcaccgagccgcagaaggtcaagggctcgacccgg
ctggaggccaagaagcagcgcaggcgcgacggccgcgacgccggccgccgccgcccggtc
atcaccgaggcggagttcctggcccgccgcgagtccgtcgaccggcagatggtcgtccgc
tcgaagggcggccgcatccagatcggcgtgctcgaggacaaagtcctcgtcgagcactac
gtcgcccggtcgcaggaggcctccctcatcgggaacgtctacctcggccgcgtgcagaac
gtgctgccgagcatggaggccgccttcgtcgacatcggccgcggccgtaacgccgtcctc
tactccggcgaggtcgactgggacgccgtcgagaccggcaaccagccccgccgcatcgag
ctcgccctcaaggcaggcgaccgcgtgctcgtccaggtcaccaaggacccggtcggccac
aagggcgcgcggctgaccagccagatctcgctgcccggccgctacctcgtgtacgtgccg
aacggctccatgaacgggatcagccgcaagctgcccgacaccgagcgctcgcgcctcaag
aagatcctcaaggaggtcctcccggagagcgccggcgtcatcgtccgcacggcggccgag
ggcgccaccgaggagcagctcaccctcgacgtcacccgcctgacggcgcagtgggcggac
atcagccgccaggtcgagacccagcaggcgcccgcgctcctgcacagcgagcccgacctc
ctgatcaagatcatccgcgacgtcttcaacgaggacttccagaaactgatcatcgccggc
gacgacgcgcgccagacgatcgagagctacctgcgccaggtcgcgcccgacctgatcgac
cgcgtggaggcctacaccggcgaccgcgacgcgttcgacgagcaccgcatcaccgagcag
atcgagaaggcgctggagcgcaaggtctggctgccgtccggcggttcgctggtcatcgac
cgcaccgaggcgatgaccgtggtggacgtcaacaccggcaagttcgtcggctccgggggc
aacctcgaagagacggtcaccaagaacaacctggaggccgcggaggagatcgtccgccag
ctccggctgcgcgacatcggcggcatcatcgtggtcgacttcatcgacatggtgctggag
tcgaaccgcgacctggtgctgcgccgcctgatcgagtgcctgagccgggaccggaccaag
caccaggtggcggaggtcacctcgctcggcctcgtccagatgacccgcaagaagctcggc
ctcggcctcctggagaccttcagcgaggcgtgcgaggtctgcgcgggccgtggtgtgatc
gtgcaccacgaccccgtcgtcaagcaccgccagccgcagcagcagccccagagcgagcgc
cggcgcggccgcggcggcaacgccggcaacggaaacggcaacggcggcggccagcagcag
caggcgagcgccgcgcacaccaacggcacgcacgcgctgaccgacgacgccaagaacgcg
ctcgcccagatcgccgcctcgaccatccacccgcatcacgagggggaggtcgcaccggcc
gccgaaccggccactcagcccgcgcaggtggccgacgcgcccgccgccgacgccgcgccg
aagaagcgccgccgcaagggcaagggcccgcgcgacgagcagcgtcaggcggaggctccg
gccgcggaggctcccgccgccgagacgaagcccgagcccgcagcgcaggagtccgctccc
gcggctccggcggccgacgagcacccgcacctcgacttcccgatgatcgacctgcccgag
ccgtccgctcccgtggcgcacgccccggtcgcgacggccgtggagaccgagctgctgctc
gactccgtgctggacgccctgccgcagccgaaggctccgggccagggccgcagccgcggc
cgccgtgcgagcacggccgtcatcaccggcggccagatcgccggcgagaagcacgaggac
tga
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