Leifsonia shinshuensis: F1C12_08505
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Entry
F1C12_08505 CDS
T06806
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lse
Leifsonia shinshuensis
Brite
KEGG Orthology (KO) [BR:
lse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lse03032
]
F1C12_08505 (topA)
03400 DNA repair and recombination proteins [BR:
lse03400
]
F1C12_08505 (topA)
Enzymes [BR:
lse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
F1C12_08505 (topA)
DNA replication proteins [BR:
lse03032
]
Prokaryotic type
DNA Topoisomerases
F1C12_08505 (topA)
DNA repair and recombination proteins [BR:
lse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
F1C12_08505 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QNE35173
UniProt:
A0A7G6Y9K8
LinkDB
All DBs
Position
complement(1775885..1778761)
Genome browser
AA seq
958 aa
AA seq
DB search
MPGTKKLVIVESPNKVKSIAQYLGEGYEVMASVGHIRDLIEPKNLPPELKKGSLGKFSVD
VENEFAPYYVVSDQKKKTVADLKRALKDADELLLATDEDREGEAIAWHLVEVLKPKVPVK
RMVFHEITREAIEKARDNTREIDTALVDAQETRRILDRLYGYEVSPVLWRKVGPGLSAGR
VQSAATRLVVDRERERLAFVAASYWGLTAQLLPEDATAFEARLARLDGERVATGRDFDDH
GRLTSGATILDETSAQALADAVRQQTTAVTVSKVDSKPYSRRPAAPFTTSTMQQEAARKL
RFSARQTMSVAQTLYENGYITYMRTDSASLSQQATNAARAQAAKLYGAETVPDKPRVYAS
KSKNAQEAHEAIRPAGEVFRTPAELEKSLRGPELRLYDLIWKRTVASQMADAKGQTASVT
VEARIGEGQLDGTVAEFTASGTVITFRGFLNAYEEGRDEERNADASGDAKLPPLTPGQTL
GVQDIAADGHETTPPPRYTEASLVKALEELGIGRPSTFASIISTIIDRGYVTQRGQALVP
SWVAFSVVRLLEDYFGDLVQYDFTAEMEDDLDRIADGEAERVDWLNSFYFGSDKHKGLRR
VIDNLGEIDARSINSIAIDDDVTLRIGKYGPYLEVQEAGAAEDATPRRVNLPPDLAPDEL
TPAKAKELIEAPVQTDRELGVNPESGKLVLAKDGRFGPYVTEADPEPEPEVDPQTGEVVE
PKKTAKKAAAKPRTASLFKSMDLATIDLDTALKLLDLPRTVGADPETGTEIQAANGRYGP
YLKKGTDTRSLPSEDDIFGIDLAGAVELFAQPKYGNRRASSALKEFDADPVSGKPIKIKD
GRFGAYVTDGETNATIPRGETVDEVDFDRAVQLLADKRAKGPAKKPAAKRTTSRTSAAKT
ATKSTAAKTTAAKTTAAKTTAAKTTAAKTTAAKTTAAKAKAAPKTGASTRAAAKKSAE
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
gtgcctggcacgaagaagctcgtcatcgtcgagtctccgaacaaggtgaagtccatcgcc
cagtacctcggcgagggctacgaggtgatggcatccgtcggacacatccgcgacctgatc
gagcccaagaaccttccgcccgagctgaagaaggggtcgctcggcaagttctccgtcgac
gtggaaaacgagttcgctccctactacgtggtctccgaccagaagaagaagaccgtcgcc
gacctcaagcgcgccctcaaggacgccgacgaactcctgctcgccactgatgaggaccgc
gaaggggaggccatcgcctggcacctggtcgaggtcctgaagcccaaggtccccgtcaag
cggatggtgttccacgagatcacccgggaggccatcgagaaggcgcgggacaacacgcgc
gaaatcgacaccgccctggtcgacgcacaggagacccgccgcatcctcgaccggctctac
ggctacgaagtgtcgcccgtgctgtggcgcaaggtcggtcctgggctctccgccggccgc
gtccagtccgccgccacccggctcgtcgtggaccgcgagcgcgagcggctcgcgttcgtc
gcggcctcctactgggggctcaccgcccagctgctcccggaggacgccacggcgttcgag
gccaggctcgcccggctggacggcgagcgcgtcgccaccgggcgcgacttcgacgaccac
ggccggctcacctccggcgcgacgatcctcgacgagacgtccgcgcaggcgctcgccgac
gccgtgcggcagcagaccacggccgtcacggtctccaaggtcgactccaagccctactca
cgtcggccggccgcgccgttcacgacctccacgatgcagcaggaggccgcccgcaagctg
cggttctccgcccgccagaccatgagcgtcgcacagaccctctacgagaacgggtacatc
acctatatgcgcaccgactccgcgtcgctgtcgcagcaggcgacgaacgcggcgcgcgca
caggcggcgaaactgtacggcgcggagaccgtcccggacaagccgcgcgtctacgcctcc
aagagcaagaacgcgcaggaggcgcacgaggcgatccgtcccgcgggcgaggtcttccgc
acgccggccgagctcgagaagtcgctccgcggtcccgagctgcggctctacgacctgatc
tggaagcggaccgtcgcctcccagatggccgacgccaagggccagaccgcctcggtcacc
gtcgaggcgcggatcggcgaggggcagctcgacggcaccgtcgccgagttcacggccagc
gggacggtgatcaccttccgcggcttcctcaacgcctacgaagagggccgcgacgaggag
cgcaacgccgacgcgagcggcgacgcgaagctgccgccgctcactccgggtcagaccctc
ggcgtccaggacatcgccgccgacggccacgagaccacccctccgccgcgctacaccgag
gcgagcctcgtgaaggcgctggaggagctcggcatcgggcgtccctccacgttcgcgagc
atcatctccacgatcatcgaccgcggctacgtcacgcagcgcgggcaggcgctcgtgccc
agctgggtcgcgttctccgtggtgcgcctgctggaggactacttcggcgacctcgtgcag
tacgacttcacggccgagatggaggacgacctcgaccgcatcgccgacggcgaggcggag
cgcgtcgactggctgaacagcttctacttcggcagcgacaagcacaagggtctgcgccgg
gtgatcgacaacctcggcgagatcgacgcccgcagcatcaactcgatcgcgatcgacgac
gacgtgaccctgcgcatcggcaagtacggcccgtacctggaggtgcaggaggccggcgcc
gccgaggacgcgacgccccgccgcgtcaacctcccgccggacctcgcccccgacgagctg
acgcccgcgaaggcgaaggagctcatcgaggctccggtccagaccgaccgcgagctcggt
gtgaacccggagagcggcaagctggtcctcgccaaggacggccggttcgggccgtacgtg
acggaggcggaccccgagcccgagcccgaggtggacccgcagaccggcgaggtcgtcgag
ccgaagaagaccgcgaagaaggccgccgccaagccgcgcacggcctcgctgttcaagtcg
atggacctcgcgaccatcgacctcgacaccgcgctgaagctgctcgacctgccgcgcacc
gtcggtgccgacccggagacgggcacggagatccaggccgcgaacggccggtacgggccg
tacctgaagaagggcacggacacccgttcgctgccgagcgaggacgacatcttcgggatc
gacctggccggcgccgtcgagctgttcgcgcagccgaagtacggcaaccgccgggcgtcg
agcgcgctcaaggagttcgacgccgacccggtcagcggcaagccgataaagatcaaggac
ggccggttcggcgcgtacgtgaccgacggcgagacgaacgcgaccatcccccggggtgag
acggtggacgaggtcgacttcgaccgcgccgtgcagctcctggcggacaagcgtgcgaag
ggaccggccaagaagccggccgccaagcgcacgacctcgcggacgagcgcggcgaagacg
gcgaccaagtcgacggcggcgaagaccacggcggcgaagacgaccgcagcgaagaccacg
gcggcgaagaccacggcggcgaagaccacggcggccaagaccacagccgccaaggccaag
gccgcgcccaagaccggcgcttcgacccgcgcggcggcgaagaagtccgccgagtga
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